Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02602 ATGAGAAGTTCGAGATCAATGAATACAAAGGACTTGCTGAAATATGCTGTATTATGTCAATTTGTGCCAAGGTTTCTTCGAATCTATCCACTGTACAAAGAAGTTACGAGGACGTCGGGCATACTCATTGAAACAGCTTGGGCAGGAGTGGCATTTAATCTCTTTCTGTACATGCTAGCTGGCCACGTATTTGGGGCAGTCTGGTACTTATGTTCCATACAGCGAGTAGGCCAGTGCTGGCAAGAAGCTTGTACCAAGCATCTTGGCTGTAGCTTTACTTCCTTATATTGTGATCATAATTACATTAATGAAGGGAATCAATTCCTCACTGATATGTGCCCTGTCAAAAAGAAAAATATTGAACCTTTTAATTTTGGAATATTCATTCAAGCCCTTCAACCTGATATTGTGGAATCAGATTTTTCGAAGAAGTTCCTTTACTGCTTCTGGTGGGGCTTGAGAAATCTAAGCTCTTCGGGGCAAAATCTTACTACAAGTCCTTGCATATGGGAAAACTGCTTTGCCATTTCCGTTTGCATCTCTGGCTTAGTGTTGTTTGCATTTCTCCTAGGCAACATGCAGATGTATTGGCGATCCTCAAATGCAAGAGAGGAGAAGATGAGAGTGAGAAGGAATGATGTCGAACAATGGATGTCACATCGTTTACTCCCTGAGAACCCAAGGGAGCGGGTTCGTAGATATGAACATTACACGTGGCAAGAAACCAGAGGTGTTGATGAACATAGTCTGCTGCATAACCTGCCTAGAGACATCCAACGACATTATAAACGTCATCTTTGCTTGGCTTTGCTCATGCGAGTTCCAATGTTTGAAAAGATGGATGAACAATTGTTGGATGCAATGTGTGCTCGTCTCAAGCCAGTGCTGTACACAGAAGAAAGTTGTATTGTTCGGGAAGGCGATCCAGTTGATGAAATGCTCTTCATCATGAGAGGCAAGCTCTTGACCATGACTACAAATGGTGGGAGAACTATATTCTTCAACTCCGATTTCCTCATGTCTGGTGATTTCTGTGGAGAAGAACTACTGACATGGGCTCTAGACCCTCATTCCTCAACCAATCTCCCTCTTTCAACTCGAACTGTTCGATCTCTTACAGAAGTTGAAGCATTTTCTTTTGAATCCAACGACTTGAAATTTGTTGCATCTCAATACCGCAAACTTCACAGCAAGCAGCTACGCCAGATTTTCAGATTTTACTCACAGCAGTGGAGAACCTGGGCAGCTTGTTTCATACAAGCAACATGGCGGTGGCGACGCCATCAAAGAAAGAAGCTCAAAGAGTCTCTCAAGGAGGAAGAGAGTAGGTTGAAAAACGCATTAGCTTCCCTTGAGGACCAGTCACTGAGTTTAGGCACCACCGTCTACGCAGCCAGATTTGCTGCTAACATGCTTCGCTCGGTGAGACGAAATAGTACTAGAAGAGCTACAATAGCCATATTGCTTCAGAAGCCAGCTGAGCCTGATTTTTTGACCTTGGAAGATAACAACATATATGAAAGATGA 1527 43.03 MRSSRSMNTKDLLKYAVLCQFVPRFLRIYPLYKEVTRTSGILIETAWAGVAFNLFLYMLAGHVFGAVWYLCSIQRVGQCWQEACTKHLGCSFTSLYCDHNYINEGNQFLTDMCPVKKKNIEPFNFGIFIQALQPDIVESDFSKKFLYCFWWGLRNLSSSGQNLTTSPCIWENCFAISVCISGLVLFAFLLGNMQMYWRSSNAREEKMRVRRNDVEQWMSHRLLPENPRERVRRYEHYTWQETRGVDEHSLLHNLPRDIQRHYKRHLCLALLMRVPMFEKMDEQLLDAMCARLKPVLYTEESCIVREGDPVDEMLFIMRGKLLTMTTNGGRTIFFNSDFLMSGDFCGEELLTWALDPHSSTNLPLSTRTVRSLTEVEAFSFESNDLKFVASQYRKLHSKQLRQIFRFYSQQWRTWAACFIQATWRWRRHQRKKLKESLKEEESRLKNALASLEDQSLSLGTTVYAARFAANMLRSVRRNSTRRATIAILLQKPAEPDFLTLEDNNIYER* 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24529455 24537139 - CsaV3_3G028090.1 Csa03g02602 523507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02602 508 SUPERFAMILY Voltage-gated potassium channels 22 241 - -
Csa03g02602 508 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 2 499 - -
Csa03g02602 508 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 499 - -
Csa03g02602 508 Pfam Ion transport protein 17 203 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa03g02602 508 Gene3D Helix hairpin bin 200 267 - -
Csa03g02602 508 Coils Coil 430 457 - -
Csa03g02602 508 CDD CAP_ED 276 395 IPR000595 -
Csa03g02602 508 Pfam Cyclic nucleotide-binding domain 297 391 IPR000595 -
Csa03g02602 508 SUPERFAMILY cAMP-binding domain-like 202 401 IPR018490 -
Csa03g02602 508 ProSiteProfiles cAMP/cGMP binding motif profile. 276 360 IPR000595 -
Csa03g02602 508 SMART cnmp_10 276 407 IPR000595 -
Csa03g02602 508 Gene3D Jelly Rolls 274 394 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02602 Csa-Chr3:24529455 Csa05g00059 Csa-Chr5:292711 0 dispersed
Csa03g02601 Csa-Chr3:24517975 Csa03g02602 Csa-Chr3:24529455 6.81E-123 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02602 K05391 - csv:101214911 1040.02