Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02608 ATGAAGAGTGACGTTAAGATTAAGAGGGGGAGGAGCACTGGAAAAGGGGAGAATATAAGGAAGATAATGAAGTGTTTATGTTCTGGTGAGAAAAAAGCTGGAGATAATATGATTCCAGCATTGAAATCACCTTCGGCTTTCGAGAATTCAGGAAGTGGACACTCTTCACGGACTGGCGAGATCATCAACAAACCAGAAATTGGGAATATAGAAGAAGCTGAGTCTTCGCTTCGCGAGAGTGGTTGTTTGAATTATGAGGAAGCAAGAGCATTGCTGGGAAGATATGAATATCAAAAAGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATTGATATCACTGCTATAACCAGTAAAATAATGATCTCCATATCTAGGAGAGGAGATCGTCTACGGAAACGATCACAAAATTTTACTGCCCCGCCAATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGCCATCCTTCTCAAAGCAAAATCATTGGAAGGCCTTGGGAGGTTCGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAAGCCGTGGAGCTGCTACCCGAGTTATGGAAGCTAGCTGATGCTTCTCAAGAAGCGATCCTTTCATACCGGCGGGCACTTCTTCATCAGTGGAACCTTGATGCGGAAACCACTGCTCGAATTCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGAAGTGAAGCTTGCCCTCCGAATCTCCGGTCTCAAATGGACAGCTCGTTTGTTCCGAAAAACAATATTGAAGAAGCTATACTTTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAAAGGATTGATTGGGATCCATCAATCTTGGATCATCTCTCTTTTGCTTTAATAATATCAGGGGATACAAGGGCTTTAGCAGGTCAAATAGAGGAATTGCCTCCTGGGATTCTACATCGACAAGAACTGCATCATGCTTTAGCTCTTTGTTATTATGGTGCAGGTGAAAACTTGACTGCTTTGAATCTGTTGAGAAAGGTGTTGGGTAGTCATGAGGATCCTAAATCGCTTCCAGCTTTATTGATGGCGTCGAAGATTTGTGGAGAGAACTGTGACCTCGCTGAAGAGGGAACGAGTATTGCTCATAGAGCTCTTCAAAACTTGGATCGTGAATGTGATCAATTGGAAGGTGTCGCCAACTGTTTGTTGGGTGTTTCACTGTCTGTGTATTCTAAATCTGCCACTGCAGATTCTGAGAAGTTTACTAGACAATCTGAGGCGATAGAAGCCTTGGAAGCTGCACGGAAGAAGACCCGAATGACTGACTCTAACGTTCTTTATCATTTGAGCCTTGAATATGCCAACGAGAGGAAGTTAGATTCAGCACTTCATTATGCAAAAAAGTGTCTCAAGCTAGAAGGTGGATCTAATATTAAAACTTGGTTACTACTGGCTAGGATTCTCTCTGCCCAAAAACGATTTGCAGATAGCGAAAGCATTATAAATGCAGCTCTGGATCAGACAGGGAAATGGGATCAAGCCGAGTTGCTTCAAACAAAAGCAAAGCTTTTAATTGCACAGGATGAGTTTAAAGGTGCTATTGAGACTTACAGTCAATTACTCGCTTTTTTTCAAGTTCAGAGTAAAAGTTTCAATTTGGGAGATAAGAAGCTACTTAAGAGCAGCAGAAATTATGCTGGAAGATTGCAATTGGAAGTGTGGCATGATCTAGCTCTCGTGTACATAAGGCTCTCACAGTGGCACGACGCCGAGGCATGCCTATCAAAGTCAAAGGCCATCTCTTCTTATTCGGCATCTAGATGTCATATCACAGGTATGCTTTATGAAGCAAAAGGGTTGTATAAAGAAGCTCTCAGAGGTTTTATGGCTGCTCTGGAGATTGATCCCATTCATGTCCCTAGCTTGGTCTCGTCGGCCGTGGTTATCAGACATCTGGGCCACCAATCGCATCCTGTGATTCGCAGTTTTTTGATGGATGCTCTAAGGCTGGACCAGACGAACCACAATGCGTGGTACAATCTTGGGCTTTTCTACAAATCAGAAGGAACCAAATCTTCATTAGGAGAAGCGCTTGAATGTTTTGAGGCTGCAACTTTCCTTGAAGAGTCTGCTCCTGTTGAGCCATTTAGATAA 2205 42.31 MKSDVKIKRGRSTGKGENIRKIMKCLCSGEKKAGDNMIPALKSPSAFENSGSGHSSRTGEIINKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAITSKIMISISRRGDRLRKRSQNFTAPPMSMHAVSLLLEAILLKAKSLEGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPELWKLADASQEAILSYRRALLHQWNLDAETTARIQKEFAIFLLYSGSEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALIISGDTRALAGQIEELPPGILHRQELHHALALCYYGAGENLTALNLLRKVLGSHEDPKSLPALLMASKICGENCDLAEEGTSIAHRALQNLDRECDQLEGVANCLLGVSLSVYSKSATADSEKFTRQSEAIEALEAARKKTRMTDSNVLYHLSLEYANERKLDSALHYAKKCLKLEGGSNIKTWLLLARILSAQKRFADSESIINAALDQTGKWDQAELLQTKAKLLIAQDEFKGAIETYSQLLAFFQVQSKSFNLGDKKLLKSSRNYAGRLQLEVWHDLALVYIRLSQWHDAEACLSKSKAISSYSASRCHITGMLYEAKGLYKEALRGFMAALEIDPIHVPSLVSSAVVIRHLGHQSHPVIRSFLMDALRLDQTNHNAWYNLGLFYKSEGTKSSLGEALECFEAATFLEESAPVEPFR* 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24633203 24637852 + CsaV3_3G028150.1 Csa03g02608 523513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02608 734 Gene3D Tetratricopeptide repeat domain 573 728 IPR011990 GO:0005515
Csa03g02608 734 PANTHER PROTEIN NPG1 13 734 IPR043376 -
Csa03g02608 734 SUPERFAMILY TPR-like 441 560 IPR011990 GO:0005515
Csa03g02608 734 SMART tpr_5 531 564 IPR019734 GO:0005515
Csa03g02608 734 SMART tpr_5 153 186 IPR019734 GO:0005515
Csa03g02608 734 SMART tpr_5 495 528 IPR019734 GO:0005515
Csa03g02608 734 SMART tpr_5 588 621 IPR019734 GO:0005515
Csa03g02608 734 SMART tpr_5 460 493 IPR019734 GO:0005515
Csa03g02608 734 SMART tpr_5 338 371 IPR019734 GO:0005515
Csa03g02608 734 SMART tpr_5 622 655 IPR019734 GO:0005515
Csa03g02608 734 SMART tpr_5 692 728 IPR019734 GO:0005515
Csa03g02608 734 Gene3D Tetratricopeptide repeat domain 66 572 IPR011990 GO:0005515
Csa03g02608 734 Pfam Tetratricopeptide repeat 462 490 IPR019734 GO:0005515
Csa03g02608 734 PANTHER PROTEIN NPGR2 13 734 - -
Csa03g02608 734 SUPERFAMILY TPR-like 529 706 IPR011990 GO:0005515
Csa03g02608 734 ProSiteProfiles TPR repeat profile. 622 655 IPR019734 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01891 Csa-Chr2:17922239 Csa03g02608 Csa-Chr3:24633203 0 dispersed
Csa04g02189 Csa-Chr4:22664714 Csa03g02608 Csa-Chr3:24633203 0 transposed
Csa03g01189 Csa-Chr3:9205046 Csa03g02608 Csa-Chr3:24633203 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02608 K21843 - csv:101223229 1434.47