Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02633 ATGCCGAAAAAGAGGATGAAGTCGATAACCCAGATTTTGTTTTGTGTGTTTTTATACTGTTGTATTGGTTTTTACACTCACTGCTCTGCTTCTGGGTTTAGTGAAGAAGCTTTGGCTTTGGTTTCCATTAAATCAGGGCTTGTTGATCCATTGAAATGGCTCAGAGATTGGAAGTTGGACGATGGAAATGACATGTTTGCAAAGCATTGTAATTGGACTGGAGTTTTTTGCAACTCAGAAGGAGCTGTTGAGAAACTAAGCCTTCCTCGTATGAATCTCAGCGGCATTTTGTCCGACGACTTACAGAAATTAACGAAGCTTACTTCTCTTGACTTGAGTTGCAATGGGTTTTCGTCTTCTTTGCCAAAATCTATTGGCAATCTCACTTCCTTGAAGAGTTTTGATGTGAGTCAAAACTATTTCGTCGGTGAAATTCCGGTGGGGTTTGGAGGAGTGGTTGGATTGACGAATTTCAATGCTTCAAGCAACAATTTCTCTGGTTTAATCCCTGAAGATCTTGGAAATGCAACTTCAATGGAGATTTTGGATCTCCGGGGGAGTTTTCTTGAAGGGTCAATTCCTATATCTTTCAAGAACTTGCAGAAGTTGAAGTTTCTTGGACTTTCTGGGAACAATCTGACCGGTCGAATCCCGGCCGAGATCGGTCAGATGTCATCGTTAGAGACTGTTATTATTGGATACAATGAGTTTGAAGGAGGGATTCCATCAGAATTTGGAAATCTCACTAATCTGAAGTATCTCGATTTGGCTGTGGGTAATCTTGGTGGTGGGATTCCTACTGAGCTTGGGAGGCTTAAAGAACTTGAGACATTGTTCCTTTATAAGAACGGATTGGAAGATCAAATTCCGTCATCGATTGGCAATGCTACTTCACTAGTGTTTCTTGATCTCTCAGACAACAAGTTAACAGGGGAGGTTCCAGCTGAGGTTGCTGAATTGAAGAACTTGCAGCTGCTGAATTTGATGTGCAACAAGCTATCTGGTGAAGTGCCTCCTGGAATTGGAGGGCTGACAAAATTGCAGGTTCTAGAGCTTTGGAACAACTCTTTTTCAGGCCAATTGCCTGCCGATCTCGGCAAGAACTCGGAGTTGGTATGGTTGGATGTTTCATCCAATTCCTTCTCTGGTCCAATTCCTGCTTCTTTATGTAATAGAGGCAATCTAACCAAGCTCATCCTCTTCAACAATGCCTTTTCGGGTTCGATTCCAATTGGATTGTCATCGTGTTACTCACTCGTTCGTGTTCGAATGCAGAACAATCTGCTATCTGGTACAATTCCAGTTGGTTTTGGAAAGCTTGGGAAACTCCAGAGGCTAGAATTAGCCAACAACAGTCTTTTTGGTAGTATCCCAAGTGATATTTCGTCTTCCAAGTCCCTTTCTTTTATTGATCTCTCTGAAAATGACCTCCATTCTTCTCTTCCTCCCTCAATTCTCTCCATTCCAAATCTTCAAACTTTTATAGTCTCTGACAATAACTTAGATGGTGAAATTCCAGATCAATTTCAGGAATGTCCTGCACTTTCCCTTCTTGATCTATCTTCAAACAATTTCACAGGAAGCATTCCAGAAAGCATTGCTTCATGTGAGAGATTGGTAAATCTGAATCTTAGAAACAATAAGTTAACTGGAGAAATCCCAAAACAGATTGCAAATATGCCATCATTGTCTGTCCTGGATCTATCAAATAACTCTCTTACTGGTAGAATACCCGATAATTTCGGTATATCTCCTGCACTTGAATCGCTTAATGTGTCATACAATAAGCTCGAGGGTCCAGTGCCATTAAATGGTGTGTTAAGAACAATCAATCCGAGTGATCTTCAAGGCAATGCTGGTCTATGTGGAGCTGTCCTACCTCCATGTTCACCAAATTCAGCATATTCATCAGGGCATGGGAACTCGCACACGTCACACATTATCGCCGGTTGGGTCATTGGAATATCTGGATTGTTAGCAATTTGTATCACTCTTTTTGGTGTTCGATCATTGTACAAGAGATGGTACTCAAGTGGAAGTTGCTTTGAAGGGAGATATGAAATGGGTGGTGGAGATTGGCCATGGAGATTGATGGCGTTCCAAAGGCTTGGATTCGCAAGCAGTGACATTTTGACTTGCATCAAGGAATCAAATGTAATTGGAATGGGAGCAACTGGGATTGTGTATAAAGCTGAAATGCCACAACTAAAGACAGTTGTGGCAGTTAAAAAGTTGTGGAGATCACAACCAGATCTTGAAATTGGAAGTTGTGAAGGTTTAGTAGGAGAAGTGAATTTGCTGGGAAAGTTAAGGCACAGGAACATAGTTCGTTTACTCGGATTTATGCACAACGATGTCGATGTCATGATCATCTATGAGTTTATGCAAAATGGAAGCCTTGGAGAAGCCTTACATGGCAAACAAGCAGGGAGGCTGCTTGTAGACTGGGTTTCAAGATACAACATAGCAATTGGAGTTGCACAAGGTTTAGCTTATCTTCATCACGATTGCAACCCACCCATCATTCATCGTGACGTTAAGCCAAATAATATACTTCTCGATTCAAATCTCGAAGCACGGTTAGCTGATTTTGGTTTGGCACGGATGATGGCTCGAAAGAACGAGACGGTTTCAATGGTAGCCGGATCCTACGGATACATTGCCCCAGAATATGGATACACTTTAAAGGTGGATGAAAAGATTGACATTTACAGCTATGGCGTCGTTCTTTTAGAGCTACTAACAGGGAAGAAGCCATTAGATCCAGAGTTCGGAGAATCTGTGGACATTGTTGAATGGATAAAAAGGAAAGTTAAGGACAATAGGCCTTTAGAAGAAGCATTAGATCCCAATCTGGGAAACTTCAAGCATGTTCAAGAAGAAATGCTGTTTGTTCTTAGAATAGCACTCCTCTGCACAGCAAAGCATCCGAAAGACAGACCTTCCATGAGAGATATAATAACAATGCTTGGAGAAGCAAAACCAAGGAGAAAAAGCAACAGTGGGAATGAAGGATTTGGAACTAACAAAGAGAAGCCAGTTTTCAGCACTTCACCTGTAAATGGCCTTCTTTAG 3075 41.5 MPKKRMKSITQILFCVFLYCCIGFYTHCSASGFSEEALALVSIKSGLVDPLKWLRDWKLDDGNDMFAKHCNWTGVFCNSEGAVEKLSLPRMNLSGILSDDLQKLTKLTSLDLSCNGFSSSLPKSIGNLTSLKSFDVSQNYFVGEIPVGFGGVVGLTNFNASSNNFSGLIPEDLGNATSMEILDLRGSFLEGSIPISFKNLQKLKFLGLSGNNLTGRIPAEIGQMSSLETVIIGYNEFEGGIPSEFGNLTNLKYLDLAVGNLGGGIPTELGRLKELETLFLYKNGLEDQIPSSIGNATSLVFLDLSDNKLTGEVPAEVAELKNLQLLNLMCNKLSGEVPPGIGGLTKLQVLELWNNSFSGQLPADLGKNSELVWLDVSSNSFSGPIPASLCNRGNLTKLILFNNAFSGSIPIGLSSCYSLVRVRMQNNLLSGTIPVGFGKLGKLQRLELANNSLFGSIPSDISSSKSLSFIDLSENDLHSSLPPSILSIPNLQTFIVSDNNLDGEIPDQFQECPALSLLDLSSNNFTGSIPESIASCERLVNLNLRNNKLTGEIPKQIANMPSLSVLDLSNNSLTGRIPDNFGISPALESLNVSYNKLEGPVPLNGVLRTINPSDLQGNAGLCGAVLPPCSPNSAYSSGHGNSHTSHIIAGWVIGISGLLAICITLFGVRSLYKRWYSSGSCFEGRYEMGGGDWPWRLMAFQRLGFASSDILTCIKESNVIGMGATGIVYKAEMPQLKTVVAVKKLWRSQPDLEIGSCEGLVGEVNLLGKLRHRNIVRLLGFMHNDVDVMIIYEFMQNGSLGEALHGKQAGRLLVDWVSRYNIAIGVAQGLAYLHHDCNPPIIHRDVKPNNILLDSNLEARLADFGLARMMARKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKKPLDPEFGESVDIVEWIKRKVKDNRPLEEALDPNLGNFKHVQEEMLFVLRIALLCTAKHPKDRPSMRDIITMLGEAKPRRKSNSGNEGFGTNKEKPVFSTSPVNGLL* 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24824322 24829130 - CsaV3_3G028400.1 Csa03g02633 523538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02633 1024 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 15 1004 - -
Csa03g02633 1024 MobiDBLite consensus disorder prediction 1001 1024 - -
Csa03g02633 1024 Gene3D Ribonuclease Inhibitor 35 151 IPR032675 -
Csa03g02633 1024 MobiDBLite consensus disorder prediction 991 1024 - -
Csa03g02633 1024 Gene3D Ribonuclease Inhibitor 152 239 IPR032675 -
Csa03g02633 1024 Gene3D Ribonuclease Inhibitor 240 339 IPR032675 -
Csa03g02633 1024 PANTHER UNNAMED PRODUCT 15 1004 - -
Csa03g02633 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Csa03g02633 1024 Pfam Protein kinase domain 716 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02633 1024 Pfam Leucine Rich repeat 104 118 IPR001611 GO:0005515
Csa03g02633 1024 ProSiteProfiles Protein kinase domain profile. 714 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02633 1024 SMART serkin_6 714 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02633 1024 Gene3D Phosphorylase Kinase; domain 1 713 798 - -
Csa03g02633 1024 Gene3D Transferase(Phosphotransferase) domain 1 799 1011 - -
Csa03g02633 1024 PRINTS Leucine-rich repeat signature 299 312 - -
Csa03g02633 1024 PRINTS Leucine-rich repeat signature 560 573 - -
Csa03g02633 1024 SUPERFAMILY L domain-like 287 604 - -
Csa03g02633 1024 Gene3D Ribonuclease Inhibitor 340 636 IPR032675 -
Csa03g02633 1024 SUPERFAMILY RNI-like 85 382 - -
Csa03g02633 1024 SMART LRR_typ_2 320 343 IPR003591 -
Csa03g02633 1024 SMART LRR_typ_2 344 368 IPR003591 -
Csa03g02633 1024 SMART LRR_typ_2 272 296 IPR003591 -
Csa03g02633 1024 SMART LRR_typ_2 440 464 IPR003591 -
Csa03g02633 1024 SMART LRR_typ_2 104 128 IPR003591 -
Csa03g02633 1024 SMART LRR_typ_2 560 584 IPR003591 -
Csa03g02633 1024 SMART LRR_typ_2 200 224 IPR003591 -
Csa03g02633 1024 Pfam Leucine rich repeat N-terminal domain 35 78 IPR013210 -
Csa03g02633 1024 Pfam Leucine rich repeat 538 597 IPR001611 GO:0005515
Csa03g02633 1024 SUPERFAMILY Protein kinase-like (PK-like) 712 990 IPR011009 -
Csa03g02633 1024 ProSitePatterns Protein kinases ATP-binding region signature. 720 744 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00091 Csa-Chr1:545619 Csa03g02633 Csa-Chr3:24824322 1.02E-06 dispersed
Csa03g00619 Csa-Chr3:5392437 Csa03g02633 Csa-Chr3:24824322 7.36E-11 dispersed
Csa03g02633 Csa-Chr3:24824322 Csa04g00403 Csa-Chr4:2466393 0 dispersed
Csa03g04544 Csa-Chr3:39605940 Csa03g02633 Csa-Chr3:24824322 7.31E-152 dispersed
Csa04g00527 Csa-Chr4:3473558 Csa03g02633 Csa-Chr3:24824322 2.18E-13 dispersed
Csa04g02122 Csa-Chr4:21951952 Csa03g02633 Csa-Chr3:24824322 1.09E-28 dispersed
Csa06g03067 Csa-Chr6:26338997 Csa03g02633 Csa-Chr3:24824322 0 dispersed
Csa03g02633 Csa-Chr3:24824322 Csa06g03068 Csa-Chr6:26350693 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78010 PF00069 Pkinase 4.10E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02633 - - csv:101222597 1995.32