Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02642 ATGGCAGAAATGGCCTGCTCCGCTGCCGACCTCCACCACCTCCTCGGCGGCTCAGCCAATGCCACTGCTGTCGCCGAGTACATTTGCAGCCGATTTGAGTCTGTGTCGACGAAATTCGTGGACACGACGTACGCAGTTGACAACACCTATCTTTTGTTTTCAGCATACCTTGTATTTGCAATGCAGCTTGGATTTGCAATGCTTTGTGCTGGGTCAGTTAGGGCGAAAAACACAATGAATATAATGTTAACAAATGTTCTTGATGCAGCAACTGGTGGAATATTTTATTATGTGTTTGGATTTGCTTTGGCATTTGGAACACCTTCAAATTCCTTTATTGGGCATCATTATTTTGGGCTTTCACAATTCCCATCTTCTTCATTTGATTATGGCTTCTTTTTGTTTCAATGGGCGTTTGCAATTGCTGCTGCTGGAATTACAAGTGGATCCATTGCTGAAAGAACTCAATTTGTTGCTTATTTGATCTATTCTTCTGTTTTGACTGGTTTGGTATATCCGATTGTTTCTCATTGGTTTTGGTCATCCGATGGTTGGGGAAGTGCCGCCCGGTCCGACAAACTCCTTTTCGGCTCCGGCGTAATCGACTTCGCCGGCTCCGGCGTCGTCCACATGGTCGGAGGAATCGCCGGTTTATGGGGCGCCCTCATAGAAGGACCACGAATCGGCCGGTTCGATCATGCCGGCCGGTCCGTCGCCCTCCGTGGCCACAGCGGCACACTGGTGGTTCTCGGCACTTTCCTCCTCTGGTTCGGCTGGTACGGCTTCAACCCCGGTTCATTCCTCAACATCCTCAAAGCCTACGGGCACACCGCCGCCCCTTATTACGGCCAATGGAGCGCCATCGGCCGCACCGCCGTCACCACAACCCTAGCCGGCTGCACAGCCGCATTAACCACTCTCTTCGGCAAACGGCTTCTCGTCGGGCATTGGAATGTGACCGATGTTTGCAACGGTCTACTAGGTGGATTTGCCGCCATAACCTCCGGGTGCGCGGTGGTAGATCCATGGGCAGCGATTGTTTGTGGGTTTTTCGCAGCTTGGGTGTTGATTGGATTCAACAAATTAGCGGAGAAATTGAAGTACGACGATCCATTAGAGGCGGCGCAATTACATGGGGGATGTGGGGCTTGGGGGATTTTGTTCACAGGGTTATTTGCAAAACAAGCTTATGTGAATGAGATATATCCAGGGTTGCCGGAAAGGCCGTACGGGATGCTGATGGGCGGCGGAGGGTGGTTGTTGGCTGCTCATTTGGTGCAAATTTTGTCGATTGTTGGTTGGGTTAGTGTGACAATGGGGATTGTTTTTTGGTTGTTGCACAAGTTTGAGTTGTTGAGGATAAAGGCGGAGGCGGAGATGGCCGGAATGGATTTGACGAGTCACGGTGGTTTGGCTTATGTTTATAACGATGAAGAGAAGTTTTGA 1446 50.28 MAEMACSAADLHHLLGGSANATAVAEYICSRFESVSTKFVDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYVFGFALAFGTPSNSFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVSHWFWSSDGWGSAARSDKLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGHTAAPYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFFAAWVLIGFNKLAEKLKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYPGLPERPYGMLMGGGGWLLAAHLVQILSIVGWVSVTMGIVFWLLHKFELLRIKAEAEMAGMDLTSHGGLAYVYNDEEKF* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24916558 24918977 + CsaV3_3G028490.1 Csa03g02642 523547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02642 481 Pfam Ammonium Transporter Family 50 473 IPR024041 GO:0008519|GO:0016020|GO:0072488
Csa03g02642 481 PANTHER AMMONIUM TRANSPORTER 1 480 - -
Csa03g02642 481 PANTHER AMMONIUM TRANSPORTER 1 480 - -
Csa03g02642 481 SUPERFAMILY Ammonium transporter 44 454 - -
Csa03g02642 481 TIGRFAM amt: ammonium transporter 47 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Csa03g02642 481 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Csa03g02642 481 Gene3D Ammonium transporter AmtB like domains 26 481 IPR029020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02642 Csa-Chr3:24916558 Csa03g03043 Csa-Chr3:28760862 1.46E-17 dispersed
Csa02g01000 Csa-Chr2:9652408 Csa03g02642 Csa-Chr3:24916558 0 wgd
Csa03g01153 Csa-Chr3:9037503 Csa03g02642 Csa-Chr3:24916558 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02642 K03320 - csv:101223077 939.488