Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02648 ATGCCTTTCTCGATTTTGCTACCTCTTTTGGTTCTTCATGTCTTCGATTTGCGTTTCTCTTGCTCAGGACAATCGTCAGTTTCACCACATATATACTTATCTCCTTCCTTACAGCCAAGCCTGCAAACAATGATTCCAGGGATGTCAACAGAGCATGCAAGGTTGGAGTCGATAAGTTTTTCATTTGTGCCTTCAAAGTTACGTGATAACTGGATATCTAAGTCTTTATTGGGATCATCTACTTCTCCTGCACCCTCTCCAGGTCCCAGCAGTGCACCCTTGCCTGTCCGGCGTCATCGACGGCGTCGTGGACGACCTCATGTGGTTGCTCCTACCCCATCAAAAGACCAAGGTTGTGATCAAATATGCATGGAGCCCCTTACTGCAGCTCCCTTTGGTTCACCTTGTGGCTGTGTGTTTCCCATGAAAGTCAGACTTCTTCTGGATATAGCTCCATATGCTGTTTTTCCTGTGATGAATGAGCTTGAAAGTGAGATTGCAGTTGGGACTTACTTAGAGCAGAGCCAAGTGAAAATCATGGGTGCAAGTGCAGACAGTCAAAATCAAGGAAGAACTATGGTGGACATAAATTTAGTACCTCTAGGGGAGAAGTTTGATAATACAACTGCGGTACTTACTTACAGGAGGTTTTGGGATAAAAAAGTACATTTGAATATGACGCTTTTTGGTGATTATGAAGTTGTCTACATTAGCTATCCGGGGATTCCTTCTTCACCGCCATATGGGGGGTACATGGGAAGTGCTCCTAGTGGAAGTGCGGGTGATCTTCCTATTACTGCAAATTTCGTTAATAAGAGCCAGAAGATGAATGTCAAAACAATTGCCATCATAGCACTTTCAGCATTTGTTGTGTTATTAGTGTTCATTGGAGCTCTTTCCATCTTTTTCAAATGGAGAAAAGTTGGCAGACCTTCTAATGCTGTTGGCCCAGTCTTCACACCATCAATTAACAAAAGATCTGGTTTAGGATCAGCCTTATCGAGTAGCATTGCAAGCTCCACCTCTGTTTCACTAATGTCCACAATGCCAACCAGTCTTCAATCTGTTAAAACATTTGCACTTTCTGAACTTGAGAAAGCAACAGACAAGTTTAGTTCAAAAAGGATTTTAGGTGAAGGGGGATTTGGCCGAGTTTACTGTGGTATTTTGGATGATGGAAATGAAGTTGCAGTTAAGTTGCTTACACGAGATAATCAGAACAGAGACCGTGAATTTATTGCAGAAGTTGAGATGTTGAGTAGACTGCATCATCGAAATCTTGTGAAACTGATTGGCATATGCATTGAAGGGCGAACTCGCTGCTTAGTTTATGAGCTTGTCCATAATGGCAGTGTTGAGTCTCACTTGCATGGCATTGACAAGAGAAACGGACCTCTTGACTGGGACGCACGATTAAAGATTGCTCTTGGGGCAGCAAGAGGTTTGGCATATCTTCACGAAGATTCTAATCCTCGTGTAATTCACCGTGATTTTAAGGCAAGTAATGTTCTGTTGGAAGTTGACTTCACCCCCAAGGTTTCGGATTTCGGATTGGCAAGGGAAGCAACTGAAGGAAGTGAACACATCTCAACACGGGTGATGGGAACTTTCGGGTACGTAGCGCCTGAATATGCAATGACTGGGCACCTGCTCGTCAAAAGTGATGTTTATAGTTATGGAGTCGTGCTACTTGAACTTCTTTCGGGCCGAAAACCAGTAGACATGTCCCAACCACATGGTGAGGAGAATCTTGTAACATGGGCACGGCCTCTATTGACTAGTAGAGAAGGTTTGGAGCAACTAGTAGATCCTTCTTTAGCTGGTACTTACGACTTCGATGACATGGCCAAAGTAGCTGCCATTGCTTCCATGTGTGTTCATCCAGAGGTGACCCAGAGGCCATTTATGGGAGAAGTTGTGCAAGCTCTAAAACTGATATACAATGACACAGACGAGACATGTGCAGATTACTGCAGTCAAAAAGAGTCCTCAGCCCGGGACTCGGATTTCAAAGGCGACCTTGTCCCATCCGACAGCAGTTGGTGGAATGCTGGTGGCCTTACACCTCGACTCACATATGGTCAAGCCTCTTCCTTCATCACCATGGAATATAGCTCTGGGCCTCTTGAAGAAATGGAAAACCGTCCGTTTTCAACTTCAAGTTTGGTAGGCGATGAGATATCTTTGCCTATTCGACATGGAAACAGGTCAGGTCCGTTGCGAACTGCTCGAAGTAAGCCTTCATTCTATAGATTTTCGGGAAGTAGGAGCGAGCATGGAGGATTTCTTTCAAGACCTTCTTGGAACAGCAACGGGTTTTGGGTTTGA 2328 44.42 MPFSILLPLLVLHVFDLRFSCSGQSSVSPHIYLSPSLQPSLQTMIPGMSTEHARLESISFSFVPSKLRDNWISKSLLGSSTSPAPSPGPSSAPLPVRRHRRRRGRPHVVAPTPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVRLLLDIAPYAVFPVMNELESEIAVGTYLEQSQVKIMGASADSQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKVHLNMTLFGDYEVVYISYPGIPSSPPYGGYMGSAPSGSAGDLPITANFVNKSQKMNVKTIAIIALSAFVVLLVFIGALSIFFKWRKVGRPSNAVGPVFTPSINKRSGLGSALSSSIASSTSVSLMSTMPTSLQSVKTFALSELEKATDKFSSKRILGEGGFGRVYCGILDDGNEVAVKLLTRDNQNRDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGIDKRNGPLDWDARLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEVDFTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPHGEENLVTWARPLLTSREGLEQLVDPSLAGTYDFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCADYCSQKESSARDSDFKGDLVPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLVGDEISLPIRHGNRSGPLRTARSKPSFYRFSGSRSEHGGFLSRPSWNSNGFWV* 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24972443 24979599 + CsaV3_3G028550.1 Csa03g02648 523553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02648 775 Pfam Protein tyrosine and serine/threonine kinase 374 642 IPR001245 GO:0004672|GO:0006468
Csa03g02648 775 CDD STKc_IRAK 377 646 - -
Csa03g02648 775 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 49 771 - -
Csa03g02648 775 SUPERFAMILY Protein kinase-like (PK-like) 355 650 IPR011009 -
Csa03g02648 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Csa03g02648 775 MobiDBLite consensus disorder prediction 78 115 - -
Csa03g02648 775 PANTHER OS01G0750732 PROTEIN 49 771 - -
Csa03g02648 775 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Csa03g02648 775 ProSiteProfiles Protein kinase domain profile. 371 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02648 775 Gene3D Transferase(Phosphotransferase) domain 1 447 670 - -
Csa03g02648 775 Gene3D Phosphorylase Kinase; domain 1 342 446 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02799 Csa-Chr1:24642337 Csa03g02648 Csa-Chr3:24972443 1.79E-101 dispersed
Csa03g02648 Csa-Chr3:24972443 Csa07g02390 Csa-Chr7:21999971 0 dispersed
Csa03g02648 Csa-Chr3:24972443 Csa01g02931 Csa-Chr1:25716837 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78011 PF07714 PK_Tyr_Ser-Thr 3.70E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02648 - - csv:101203278 1448.34