Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g02663 | ATGGCGGTTTCTGTCACACTACAAACCTCCACATCCCTTCTCCTTCTCCTTCTCCTCATCTTCTTCTTCCTTCATTCCAGTTTCGCTGAAGACGAGAGACTGCATAGCTTCAATTCTTCGTCAATGCCCTACCGATATATCGAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTTGAGCATTCGCAATAGCACAGAGAGGAGGAACTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATAGATGACTGTTGGCGTTGTGACCCACGTTGGCAATTGCGGCGAAAGCACTTGGCCAACTGCGGCATTGGGTTCGGCCGTAATGCAGTTGGTGGCCGTGATGGTCGATACTATGTCGTCTCCGATCCTGGTGACGACGATCCTATCAATCCCAGACCAGGGACCCTTCGCCATGCAGTGATTCAAGACAGGCCATTGTGGATTGTGTTCAAAAGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGTTTCAAGACAATTGATGGCCGTGGTGCTAATGTACACATTGCTTATGGAGCTTGTATTACGATCCAATTCATAACCAACGTCATTATTCATGGTTTGCATATTCACGACTGCAAGCCAACGGGCAATGCCATGGTTCGAAGCTCACCAAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATTTTTGGGTCGAGTCATATTTGGATTGACCATAATTCTCTTTCTTCCTGTGCTGATGGGCTCATTGATGCTGTCATGGGATCAACTGCCATCACAATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGATTCTTATGTAAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGCGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCACGTAGTAAACAATGACTACACTCACTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAAGGCAACAGATATCTTGCCCCTGTCAACCCTTTTGCCAAAGAGGTAACAAAGAGAGTTGAAACACATAATGGTATATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTATGCTCAATGGAGCCTACTTCACTCCATCAGGAGCTGGTGCAGCAGCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGCTCTATTACTTCAAATGCAGGTGCCCTTGCTTGTCGTAGGGGATACCGGTGTTAA | 1302 | 45.78 | MAVSVTLQTSTSLLLLLLLIFFFLHSSFAEDERLHSFNSSSMPYRYIENEHAVDNPEEIASMVDLSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSDPGDDDPINPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPVNPFAKEVTKRVETHNGIWKHWNWRSEGDLMLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSITSNAGALACRRGYRC* | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 25266042 | 25271347 | - | CsaV3_3G028700.1 | Csa03g02663 | 523568 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g02663 | 433 | Pfam | Pectate lyase | 167 | 348 | IPR002022 | - | |
Csa03g02663 | 433 | SMART | amb_all | 159 | 356 | IPR002022 | - | |
Csa03g02663 | 433 | PANTHER | PECTATE LYASE | 40 | 430 | - | - | |
Csa03g02663 | 433 | Gene3D | - | 84 | 426 | IPR012334 | - | |
Csa03g02663 | 433 | PRINTS | Pollen allergen Amb family signature | 107 | 124 | IPR018082 | - | |
Csa03g02663 | 433 | PRINTS | Pollen allergen Amb family signature | 131 | 156 | IPR018082 | - | |
Csa03g02663 | 433 | PRINTS | Pollen allergen Amb family signature | 167 | 183 | IPR018082 | - | |
Csa03g02663 | 433 | PRINTS | Pollen allergen Amb family signature | 231 | 252 | IPR018082 | - | |
Csa03g02663 | 433 | PRINTS | Pollen allergen Amb family signature | 311 | 330 | IPR018082 | - | |
Csa03g02663 | 433 | PRINTS | Pollen allergen Amb family signature | 333 | 352 | IPR018082 | - | |
Csa03g02663 | 433 | PRINTS | Pollen allergen Amb family signature | 375 | 399 | IPR018082 | - | |
Csa03g02663 | 433 | PRINTS | Pollen allergen Amb family signature | 404 | 427 | IPR018082 | - | |
Csa03g02663 | 433 | SUPERFAMILY | Pectin lyase-like | 62 | 427 | IPR011050 | - | |
Csa03g02663 | 433 | PANTHER | PECTATE LYASE 18-RELATED | 40 | 430 | IPR045032 | GO:0030570 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g02663 | Csa-Chr3:25266042 | Csa05g01868 | Csa-Chr5:21944533 | 0 | dispersed | |
Csa02g00989 | Csa-Chr2:9495612 | Csa03g02663 | Csa-Chr3:25266042 | 0 | wgd | |
Csa03g01128 | Csa-Chr3:8895882 | Csa03g02663 | Csa-Chr3:25266042 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g02663 | K01728 | - | csv:101207204 | 864.759 |