Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02688 ATGGGCGGCCACTCGGTGTTCACCTTGGCTGAGGTTGCTTCCCATGACAATCGCAACGATTGCTGGTTGATCATTGAAGACAAGGTGTATGATGTAACAAAATTCCTTGAAGACCATCCTGGTGGTGATGAAGTTTTGTTGTCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGATGTTGGGCACAGTAGCACTGCCAGAGCAATGATGGAAGAATTTTATGTAGGCGATATCGATAGCTCAACTATTCCTGCAAAAAGAGATTATACTCCTCCAAAGCAACCCCTATACAACCAAGACAAGACACCAGAATTCATTATCAAGGTCCTCCAGTTTCTTGCTCCCTTGGTAATTTTGGGCTTGGCTTTTGGCATCCACCTCTATATCAAAACAACTTAA 402 43.53 MGGHSVFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSGVGKDATNDFFDVGHSSTARAMMEEFYVGDIDSSTIPAKRDYTPPKQPLYNQDKTPEFIIKVLQFLAPLVILGLAFGIHLYIKTT* 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25692835 25695468 - CsaV3_3G029940.1 Csa03g02688 523593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02688 133 SMART Cyt_b5_2 7 80 IPR001199 -
Csa03g02688 133 PRINTS Cytochrome B5 signature 29 39 IPR001199 -
Csa03g02688 133 PRINTS Cytochrome B5 signature 39 53 IPR001199 -
Csa03g02688 133 PRINTS Cytochrome B5 signature 54 61 IPR001199 -
Csa03g02688 133 PRINTS Cytochrome B5 signature 67 79 IPR001199 -
Csa03g02688 133 Gene3D - 3 83 IPR036400 -
Csa03g02688 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 4 80 IPR001199 -
Csa03g02688 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 8 79 IPR001199 -
Csa03g02688 133 PANTHER - 1 131 - -
Csa03g02688 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 90 IPR036400 -
Csa03g02688 133 PANTHER CYTOCHROME B5 1 131 - -
Csa03g02688 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 35 42 IPR018506 GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00931 Csa-Chr2:8786198 Csa03g02688 Csa-Chr3:25692835 3.40E-63 dispersed
Csa03g02688 Csa-Chr3:25692835 Csa05g00025 Csa-Chr5:116589 3.81E-57 dispersed
Csa02g00093 Csa-Chr2:622857 Csa03g02688 Csa-Chr3:25692835 7.83E-20 transposed
Csa03g01102 Csa-Chr3:8715763 Csa03g02688 Csa-Chr3:25692835 4.17E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02688 K23490 - csv:101212882 275.404