Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02688 ATGGGCGGCCACTCGGTGTTCACCTTGGCTGAGGTTGCTTCCCATGACAATCGCAACGATTGCTGGTTGATCATTGAAGACAAGGTGTATGATGTAACAAAATTCCTTGAAGACCATCCTGGTGGTGATGAAGTTTTGTTGTCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGATGTTGGGCACAGTAGCACTGCCAGAGCAATGATGGAAGAATTTTATGTAGGCGATATCGATAGCTCAACTATTCCTGCAAAAAGAGATTATACTCCTCCAAAGCAACCCCTATACAACCAAGACAAGACACCAGAATTCATTATCAAGGTCCTCCAGTTTCTTGCTCCCTTGGTAATTTTGGGCTTGGCTTTTGGCATCCACCTCTATATCAAAACAACTTAA 402 43.53 MGGHSVFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSGVGKDATNDFFDVGHSSTARAMMEEFYVGDIDSSTIPAKRDYTPPKQPLYNQDKTPEFIIKVLQFLAPLVILGLAFGIHLYIKTT* 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25692835 25695468 - CsaV3_3G029940.1 Csa03g02688 523593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02688 133 SMART Cyt_b5_2 7 80 IPR001199 -
Csa03g02688 133 PRINTS Cytochrome B5 signature 29 39 IPR001199 -
Csa03g02688 133 PRINTS Cytochrome B5 signature 39 53 IPR001199 -
Csa03g02688 133 PRINTS Cytochrome B5 signature 54 61 IPR001199 -
Csa03g02688 133 PRINTS Cytochrome B5 signature 67 79 IPR001199 -
Csa03g02688 133 Gene3D - 3 83 IPR036400 -
Csa03g02688 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 4 80 IPR001199 -
Csa03g02688 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 8 79 IPR001199 -
Csa03g02688 133 PANTHER - 1 131 - -
Csa03g02688 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 90 IPR036400 -
Csa03g02688 133 PANTHER CYTOCHROME B5 1 131 - -
Csa03g02688 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 35 42 IPR018506 GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02688 K23490 CYB5; cytochrome b5 - csv:101212882 275.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00931 Csa-Chr2:8786198 Csa03g02688 Csa-Chr3:25692835 3.40E-63 dispersed
Csa03g02688 Csa-Chr3:25692835 Csa05g00025 Csa-Chr5:116589 3.81E-57 dispersed
Csa02g00093 Csa-Chr2:622857 Csa03g02688 Csa-Chr3:25692835 7.83E-20 transposed
Csa03g01102 Csa-Chr3:8715763 Csa03g02688 Csa-Chr3:25692835 4.17E-66 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g00025 . 1 135 NADPH P450 reductases AT5G53560 77.8 2.6e-58 221.5
Csa03g01102 . 68 200 NADPH P450 reductases AT5G53560 69.2 6.2e-52 200.3
Csa02g00931 . 1 135 NADPH P450 reductases AT5G53560 66.7 9.9e-50 193.0
Csa03g02688 . 6 134 NADPH P450 reductases AT5G53560 64.3 1.9e-45 178.7
Csa03g01102 . 68 199 NADPH P450 reductases AT5G48810 64.9 5.6e-48 187.2
Csa02g00931 . 1 134 NADPH P450 reductases AT5G48810 61.8 1.8e-46 182.2
Csa05g00025 . 1 134 NADPH P450 reductases AT5G48810 60.3 4.5e-45 177.6
Csa03g02688 . 1 132 NADPH P450 reductases AT5G48810 62.2 7.6e-45 176.8
Csa03g01102 . 89 202 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Csa02g00931 . 13 135 NADPH P450 reductases AT2G32720 72.7 2.1e-47 185.3
Csa03g02688 . 21 132 NADPH P450 reductases AT2G32720 70.5 6.4e-41 163.7
Csa05g00025 . 22 133 NADPH P450 reductases AT2G32720 65.2 2.1e-39 158.7
Csa06g02086 . 1 130 NADPH P450 reductases AT1G26340 55.2 2.3e-38 155.2
Csa04g01877 . 2 282 NADPH P450 reductases AT5G17770 82.2 4.3e-132 467.6
Csa03g03663 CCT 2 281 NADPH P450 reductases AT5G17770 77.5 1.3e-125 446.0
Csa04g01228 . 6 279 NADPH P450 reductases AT5G17770 75.2 1.0e-117 419.9
Csa05g00025 . 1 135 NADPH P450 reductases AT5G53560 77.8 2.6e-58 221.5
Csa03g01102 . 68 200 NADPH P450 reductases AT5G53560 69.2 6.2e-52 200.3
Csa02g00931 . 1 135 NADPH P450 reductases AT5G53560 66.7 9.9e-50 193.0
Csa03g02688 . 6 134 NADPH P450 reductases AT5G53560 64.3 1.9e-45 178.7
Csa03g01102 . 68 199 NADPH P450 reductases AT5G48810 64.9 5.6e-48 187.2
Csa02g00931 . 1 134 NADPH P450 reductases AT5G48810 61.8 1.8e-46 182.2
Csa05g00025 . 1 134 NADPH P450 reductases AT5G48810 60.3 4.5e-45 177.6
Csa03g02688 . 1 132 NADPH P450 reductases AT5G48810 62.2 7.6e-45 176.8
Csa03g01102 . 89 202 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Csa02g00931 . 13 135 NADPH P450 reductases AT2G32720 72.7 2.1e-47 185.3
Csa03g02688 . 21 132 NADPH P450 reductases AT2G32720 70.5 6.4e-41 163.7
Csa05g00025 . 22 133 NADPH P450 reductases AT2G32720 65.2 2.1e-39 158.7
Csa06g02086 . 1 130 NADPH P450 reductases AT1G26340 55.2 2.3e-38 155.2
Csa04g01877 . 2 282 NADPH P450 reductases AT5G17770 82.2 4.3e-132 467.6
Csa03g03663 CCT 2 281 NADPH P450 reductases AT5G17770 77.5 1.3e-125 446.0
Csa04g01228 . 6 279 NADPH P450 reductases AT5G17770 75.2 1.0e-117 419.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156