Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02706 ATGGGACCAGGAGTCCCCTTATCTGGCCCTGCAAAACAGGCTGAGATTCTCAGGAAAGATGGGAACCACTATTTTCAAAAGGGTCGAATTGGAGCTGCCATTGAAGCTTATACCGAGGCGATTACACTATGCCCCAATGTTCCTGTGTACTTGACGAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAATAAGGTGGAGGAGGATTGTCGGAGAGCTATTCAGCTCGATAGCAGTTCTGTAAAGGCACATTACATGTTAGGATTAGCGTTATTACAAAATAAAGAATATCCAGAAGGAATCAAACATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGAAAATCCAAAGAGTTATATCGTAGAGGAGATATGGCAGGAACTTGCTAAAGCAAAATACAGGGAGTGGGAACAAGCATCCACCGAGCGTTCATGGGAATTGCAGACATTGAAAGAAGCTTGTGAGGCTGCGCTTGAACAAAAATATTTTCTTGACCAATCTGAACTAGAAGGGTTCGTAGATGAAGCTGATATTGCTCATCGGAAACAATTAAAATCGCTAAGAAGTGTGTTTGAAAAAGTTACGGAGGCAGATTCGCCATCAGAGGTACCTGATTATCTTTGTTGTAAAATCACACTCGATATTCTTCGCGATCCTGTTATTACCCCGAGCGGGGTTACTTACGAGAGAGCAGTGATTCTCGACCATTTTAATAAGGTTGGTAACTTTGATCCCATAACGCGGGAGCTGCTCAACGAATCCCAGCTTATACCGAACTTAGCCATCAAGGAAGCAGTACAATCCTTTCTAGATAAGCACGGATGGGCTTATAATATGGACTAA 846 43.38 MGPGVPLSGPAKQAEILRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWNKVEEDCRRAIQLDSSSVKAHYMLGLALLQNKEYPEGIKHLEKALDLGRGENPKSYIVEEIWQELAKAKYREWEQASTERSWELQTLKEACEAALEQKYFLDQSELEGFVDEADIAHRKQLKSLRSVFEKVTEADSPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFNKVGNFDPITRELLNESQLIPNLAIKEAVQSFLDKHGWAYNMD* 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25863160 25871314 + CsaV3_3G030120.1 Csa03g02706 523611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02706 281 Pfam Tetratricopeptide repeat 24 46 IPR019734 GO:0005515
Csa03g02706 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 50 108 - -
Csa03g02706 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 10 279 IPR045200 GO:0000209|GO:0061630
Csa03g02706 281 PANTHER OS08G0113300 PROTEIN 10 279 - -
Csa03g02706 281 SUPERFAMILY RING/U-box 199 278 - -
Csa03g02706 281 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Csa03g02706 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
Csa03g02706 281 SMART tpr_5 48 81 IPR019734 GO:0005515
Csa03g02706 281 SMART tpr_5 14 47 IPR019734 GO:0005515
Csa03g02706 281 SMART tpr_5 82 115 IPR019734 GO:0005515
Csa03g02706 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515
Csa03g02706 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Csa03g02706 281 Gene3D Tetratricopeptide repeat domain 9 144 IPR011990 GO:0005515
Csa03g02706 281 SUPERFAMILY TPR-like 13 135 IPR011990 GO:0005515
Csa03g02706 281 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Csa03g02706 281 CDD RING-Ubox_CHIP 204 270 IPR045202 -
Csa03g02706 281 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02706 Csa-Chr3:25863160 Csa04g01797 Csa-Chr4:17641191 3.99E-10 dispersed
Csa03g02706 Csa-Chr3:25863160 Csa02g01443 Csa-Chr2:13832014 2.37E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02706 K09561 - csv:101215457 573.548