Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02707 ATGGCCAAAACAGGTGTCTTTGATTCTGATCCTACTCTTATCGGCAAACCCACTGACTTGAAGAAAGAGTTACAAACACTCATTCTTGCTATCATTGATGACGACAATTACTCCACCGACACCATCGATAACGCTATACACATTCTTTCTGCTCTCAAGGACTTGAAACTCAGGAAGAGATCCCGTTCCTCTTCTAATCTTTTCCACAATCTCATTTCTCCCCAAGAATTTCGTTGTCCTCTTTCTAGAGAACTCATGAGAGATCCTGTCATTCTCTCTACTGGCGAGACATATGACAGACCCTTCATTCAGAAATGGTTAAATTCAGGGAACAGGACTTGCCCTAGAACTCAGCAAGTTCTTTCGCACACCAATCTCACTCCCAATCACTTGATTCGTGAAATGATATCTCAGTGGTGTGCAACTCGGGGAATTGAGTTGCAAGATCGTGTCCGTGTTCATTATCTTGATGACGATGTCATAACCGAGGCTGATCGAGACCGTTTTCTCATGTTACTTGAGAAAATGTCTTTGACGGTATCTGAACAGAAAGAAGCTGCAAAGGAGCTACGAATGTTGACGAAGCGAATGCCTTCGTTTCGAGCACTTTTTGGTGAGTCCCTTGATGCCATATCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAAAGTAGTAGTAGTATTCACACGGATCTGCAAGAAGATGTGATCACAACCCTCTTGAATTTGTCGATCCATGACAACAACAAGAAACTTGTTGCTGAAACACCCTATGCAATACCACTTCTAATGGAAGCGTTGAGATCAGGAACCATGGAAACAAGGAGCAATGCAGCTGCAGCCCTATTTACTCTATCTGCCCTCGATCCAAACAAAACAATCATTGGGAAAGCTGGTGCCTTGAAACCACTTATCGAGCTTTTGGACTTGGGGCATCCCTTATCAATCAAAGATGCTGCTTCAGCAATATTCAATCTTTGTATACTTCATGAAAACAAAGCAAGAGCCGTGCGTGATGGTGCAGTTCGAGTGCTTCTGAAAAAGATCATGAGCCAGATGCATGTCGATGAGTTGTTGGCTATTCTTGCAATGCTATCATGCCATCAAAGAGCTATTGAAGAAATTGGAGAACTTGGAGCTGTCCCATTCTTACTCAGAATTATCAGGGAAAGTTCTTGTTCACGTAACAAGGAAAATTGCATTGTGATCATCCATTCTGTCTGCTTATATGATCGAACCAAATGGAAGGATATGAGGGAAGAAGAGAAATGCTATCGAACCATCTCTGAACTTGCTCAGAATGGGACTTCAAGGGCTAAAAGAAAAGCAAGTGGCATACTTGAAAGAATAAACAGGGTAGTTAATATGACCCATACGGCCTAA 1386 42.28 MAKTGVFDSDPTLIGKPTDLKKELQTLILAIIDDDNYSTDTIDNAIHILSALKDLKLRKRSRSSSNLFHNLISPQEFRCPLSRELMRDPVILSTGETYDRPFIQKWLNSGNRTCPRTQQVLSHTNLTPNHLIREMISQWCATRGIELQDRVRVHYLDDDVITEADRDRFLMLLEKMSLTVSEQKEAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSSSSIHTDLQEDVITTLLNLSIHDNNKKLVAETPYAIPLLMEALRSGTMETRSNAAAALFTLSALDPNKTIIGKAGALKPLIELLDLGHPLSIKDAASAIFNLCILHENKARAVRDGAVRVLLKKIMSQMHVDELLAILAMLSCHQRAIEEIGELGAVPFLLRIIRESSCSRNKENCIVIIHSVCLYDRTKWKDMREEEKCYRTISELAQNGTSRAKRKASGILERINRVVNMTHTA* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25874739 25877765 - CsaV3_3G030130.1 Csa03g02707 523612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02707 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 146 IPR013083 -
Csa03g02707 461 Gene3D - 160 454 IPR011989 -
Csa03g02707 461 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Csa03g02707 461 Pfam Armadillo/beta-catenin-like repeat 290 328 IPR000225 GO:0005515
Csa03g02707 461 CDD RING-Ubox_PUB 77 119 IPR045210 -
Csa03g02707 461 SUPERFAMILY ARM repeat 182 451 IPR016024 -
Csa03g02707 461 Pfam U-box domain 74 143 IPR003613 GO:0004842|GO:0016567
Csa03g02707 461 SUPERFAMILY RING/U-box 74 149 - -
Csa03g02707 461 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Csa03g02707 461 PANTHER U BOX DOMAIN-CONTAINING 6 459 - -
Csa03g02707 461 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 459 - -
Csa03g02707 461 SMART arm_5 247 288 IPR000225 GO:0005515
Csa03g02707 461 SMART arm_5 289 329 IPR000225 GO:0005515
Csa03g02707 461 SMART arm_5 368 410 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00797 Csa-Chr2:6887905 Csa03g02707 Csa-Chr3:25874739 2.41E-121 dispersed
Csa03g02707 Csa-Chr3:25874739 Csa05g02787 Csa-Chr5:28504015 1.77E-89 dispersed
Csa03g02707 Csa-Chr3:25874739 Csa01g02400 Csa-Chr1:21307088 9.95E-87 transposed
Csa03g02707 Csa-Chr3:25874739 Csa06g01498 Csa-Chr6:12659968 6.76E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02707 - - csv:101215688 884.019