Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02724 ATGTCCCTCCTTAGTAGATTCTTTTACCGAAGACCTCCAGATGGGTTGCTGGAATTTGTTGAACGAGTCTATATTTTTGATTCGTGTTTTTCGACTGAAGCTTTGCCTGATGGGGAGAAAAGGAGCCAATTTGCAGAAGTGTTGTGTGCGTATGACGTCACTGTCATGGATTATCCTCGACAATATGAAGGTTGTCCGCTTCTTCCACTATCGTTGATTCAGCACTTCCTCCGTGTTTGTGAAAGTTGGCTTCTGCTTGGTAACCAACAAAATGTTATTCTTCTTCACTGTGAGAGGGGAGGTTGGCCTCTCTTGGCATTCCTTTTGGCTAGTTTTTTGATTTTTAGAAAAATGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTACATCGAGAAGCTCCCAAAGGGTTTTTGCAGCTCTTGTCCCCACTAAATCCATTTCCATCTCAGCTCCGCTACTTGCAATATGTAGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTCTCTTTAGATTGTGTAATTCTTCGTGGCGTTCCAGGTTTTGATGCTCAGAATGGCTGCAGACCAGTCATTCGTATTTTTGGGAGGAATCTTTTCAGTAAGGGTGGACTTTCCACGCAGATGCTTTTCTCTATGCCCAAGAAGAACAAGGCCCTCCGTCACTACCATCAGGCAGACTGTGATGTGATTAAAATAGACGTACAGTGTTTGGTTCAAGGAGATGTAGTGCTGGAGTGTTCACATTTGGAATCGGAACCAGAAAGAGAAGTTATGATGTTTCGTATTATGTTCAATACAGCATTTATTAGATCAAACATACTGATGCTAACCTCTGAAAATTTGGATATTCTTTGGGAGTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCTGAGGTTTTGTTTGGGGAGATGGAAAACATCTCTCCTCCAAGGGCTCCAACCTCCATTTTGAATGGTGAAGAGAAAGGTGGATTGCCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTCGAGTGGATTGATAACAACGATGATGCTGCCTTGTGGCTACTTAAGAATCTTTCTGCCTTGAGTGATGTGAAAGAATTGTCAAGATTGCAATATAAAACTAGTTCATACTCTTCACCAGTAGACTCTGAAGAGGAAAATAATACATCTAGCACTGCCGATAGTTCAGATGAAGTATTTGATATTATTACAAAGCCTTTTGTGGATCCAACTTCTACCAACTTTACAATTCCAGCCACGGTACATTCTTCTGAATTATTGTCTGACAAGATTGGTGCTAATGAAGTGAATATTTCATCAGAGTCTCCTCAATCTTCTGATGAATTTCAAGACAAGATATTTTCAAATAAAGAACCTTTGCCCTCTTCATCACCTCTGTTGCCTCCATCTAATCTTCCATCTACCGATGCTAGTGGGAAACTTGACTCAAATAATATGACACCAACTGTTAAGGTGATTCCTCCACCACCACCACCACCACCACCACCGCCACCACCTTTTTCTCTATCACATAACAAGCCTCATGTAGAAACTTCCTCTAGTTCAGATTCGACCACTGTAACAATGCATGTGAGACCCCCTCCACCTCCTCCATCTCCACCTCATGCTCCTTCACCTCCACCTCCACCTCCACCTCCACCCCCAATTGCAAAATCTTCCGGTGCTCCCCCACCTCCGCCTCCTCCCCCTCCAGTAGTCCTGAAATCTTCTAGTGCTCCTCCACCTCCACCTCCGCCTCCACCCCCACATATAGTTCCGAAATCTTCTAGTGTTCCTCCGCCCCCGCCCCCGCCACTGCCTTCGCCTCCAGTTTCAAAATCTTCTAGTGCTACTCCACCTCCTCCTCCTCTGCCCCTAAAATCTTCTAGTGCTCCCCCACCTCCTCCAACTCCGCCTCTAAAATTTTCCAGTGCTCCTCCACCTCCACCTCCTCCTCCGTTTTCAAAATTTTCTAGTGCTCCTCCAACTCCGCCTCCACCTCCATTTCCAAAACTTTCTGGTGCTCCTCCACCTCCACCTCCACCTCCTCCACAATCAAATAGTGGTGCACCAGTTCCACCTCCTCCACCACCGCCAAAACCTCCCAGTGTTGAGCTGCCAAGTCATGGTGCTAAATCAACTAGACCTCCTCCACCTCCTCCACCAGCAAAGCCCTTCAATTCCAATTCTCTGACAAGTCAAGGTGCTACACCAATGCCACCCCCTCCTCCCGGATCAAGAGGATCAAATGTACCACCGCCGCCGCCGCCTTCTGCTGGAAGAGGCAAAGCTTCCCTAGGATCAACAGCTCAAGGAAGAGGCCGAGTTGCCACAGGAGTTGTAAATGCTCCAAAAAAAAACACCTTAAAACCATTACACTGGGTGAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAAGAAAATCAATCAAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCCGCTTCTGCTTCTGATGGAAGTGGCAGTAAAGGTGGAGGTCGACGTGGTTCCAACATCAATAAACCTGAAAAAGTGCAACTGATTGACCTGCGGAGAGCATACAACTGTGAGATAATGCTCTCAAAAATAAAGATTCCTTTACCAGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACGTTGAAGGGTTATACAGGTGACAGAGAAATGCTCGGAAAGTGTGAGCAGTTTTTTCTCGAGCTATTGAAGGTCCCACGAATAGAGTCCAAGTTACGAGTATTTGCTTTCAAAATCACCTTTTCTAGTCAGGTGAATGATTTGAGATATCATTTGAGCACAATAAATGATGCTACAAGAGAGGTCAAAGAATCTGCAAAACTGCGTCAGATAATGCAAACTATTCTTACACTGGGAAATGCGTTAAACCAGGGTACTGCTCGAGGCTCCGCTATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATCTATGTAAGCTCATTGCAGAGAAAATGCCAGAGTTACTTGATTTTGACAAGGACCTTGTTCATTTAGAAGCTGCCTCCAAGATTCAATTGAAAGCATTGGCCGAGGAAATGCAAGCAGTAAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACTGCCTCAGAAAACGATGGTGTGATCTCTATTGGTTTCCAAAAGGTGCTGAAGAATTTTCTTGATACGGCCGAAGCTGAAGTAAGGGCACTTATCTCCTTATATTCTGAAGTGGGGAGAAATGCGGACTCTCTATCACAGTACTTTGGCGAGGATCCAGCTCGGTGCCCTTTTGAGCAAGTGACTCAAATTTTGATAGTCTTCGTCAAGATGTTCAGGAAGTCACGAGAAGAAAATGAAAGGCAGGCTGATGCTGAAAAGAAAAAAATAGAGAAGGAAGCCATGAAAGAAAGAAGTTCAGTTAAAGCAAAGTGA 3570 44.51 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEALPDGEKRSQFAEVLCAYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNVILLHCERGGWPLLAFLLASFLIFRKMHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGVPGFDAQNGCRPVIRIFGRNLFSKGGLSTQMLFSMPKKNKALRHYHQADCDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILMLTSENLDILWESKERYPKGFRAEVLFGEMENISPPRAPTSILNGEEKGGLPIEAFSRVQELFSGVEWIDNNDDAALWLLKNLSALSDVKELSRLQYKTSSYSSPVDSEEENNTSSTADSSDEVFDIITKPFVDPTSTNFTIPATVHSSELLSDKIGANEVNISSESPQSSDEFQDKIFSNKEPLPSSSPLLPPSNLPSTDASGKLDSNNMTPTVKVIPPPPPPPPPPPPPFSLSHNKPHVETSSSSDSTTVTMHVRPPPPPPSPPHAPSPPPPPPPPPPIAKSSGAPPPPPPPPPVVLKSSSAPPPPPPPPPPHIVPKSSSVPPPPPPPLPSPPVSKSSSATPPPPPLPLKSSSAPPPPPTPPLKFSSAPPPPPPPPFSKFSSAPPTPPPPPFPKLSGAPPPPPPPPPQSNSGAPVPPPPPPPKPPSVELPSHGAKSTRPPPPPPPAKPFNSNSLTSQGATPMPPPPPGSRGSNVPPPPPPSAGRGKASLGSTAQGRGRVATGVVNAPKKNTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKGYTGDREMLGKCEQFFLELLKVPRIESKLRVFAFKITFSSQVNDLRYHLSTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLIAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGVISIGFQKVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFRKSREENERQADAEKKKIEKEAMKERSSVKAK* 1190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26029083 26038086 - CsaV3_3G030300.1 Csa03g02724 523629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02724 1189 SMART PTEN_C2_2 168 308 IPR014020 -
Csa03g02724 1189 MobiDBLite consensus disorder prediction 716 730 - -
Csa03g02724 1189 MobiDBLite consensus disorder prediction 473 493 - -
Csa03g02724 1189 PANTHER FORMIN-J 681 1185 - -
Csa03g02724 1189 PANTHER FORMIN-J 1 698 - -
Csa03g02724 1189 SUPERFAMILY Formin homology 2 domain (FH2 domain) 721 1177 - -
Csa03g02724 1189 MobiDBLite consensus disorder prediction 836 850 - -
Csa03g02724 1189 MobiDBLite consensus disorder prediction 740 764 - -
Csa03g02724 1189 SMART it6_source 466 1189 IPR015425 -
Csa03g02724 1189 Coils Coil 1158 1181 - -
Csa03g02724 1189 Pfam Formin Homology 2 Domain 788 1157 IPR015425 -
Csa03g02724 1189 MobiDBLite consensus disorder prediction 534 709 - -
Csa03g02724 1189 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 170 309 IPR035892 -
Csa03g02724 1189 MobiDBLite consensus disorder prediction 516 533 - -
Csa03g02724 1189 MobiDBLite consensus disorder prediction 459 788 - -
Csa03g02724 1189 Gene3D Protein tyrosine phosphatase superfamily 7 161 IPR029021 -
Csa03g02724 1189 ProSiteProfiles Formin homology-2 (FH2) domain profile. 783 1183 IPR015425 -
Csa03g02724 1189 Pfam C2 domain of PTEN tumour-suppressor protein 169 307 IPR014020 -
Csa03g02724 1189 Coils Coil 1064 1091 - -
Csa03g02724 1189 Gene3D - 167 312 - -
Csa03g02724 1189 ProSiteProfiles C2 tensin-type domain profile. 170 309 IPR014020 -
Csa03g02724 1189 Gene3D Formin, FH2 domain 784 1169 IPR042201 -
Csa03g02724 1189 MobiDBLite consensus disorder prediction 1160 1189 - -
Csa03g02724 1189 MobiDBLite consensus disorder prediction 379 400 - -
Csa03g02724 1189 MobiDBLite consensus disorder prediction 494 514 - -
Csa03g02724 1189 MobiDBLite consensus disorder prediction 836 856 - -
Csa03g02724 1189 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 45 157 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01880 Csa-Chr1:15792317 Csa03g02724 Csa-Chr3:26029083 1.69E-117 dispersed
Csa03g02724 Csa-Chr3:26029083 Csa02g01413 Csa-Chr2:13503958 5.36E-31 dispersed
Csa03g02724 Csa-Chr3:26029083 Csa04g02634 Csa-Chr4:25716565 1.42E-151 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02724 - - csv:101217517 1012.68