Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02731 ATGGAGCGGAATTACCCCTATGAGAATGGAGTGATGATGACGAGAGACCCAAAGCCAAGACTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAGCTTGGTGGGCCGGAAAAAGCAACTCCCAAGTCTGTGTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTATCACTTGAAGAGCCATTTGCAGAAGTATAGACTTGGACTGCAAACACGAAAACAAAATGTGGCAGAGCAAAGGAATGAAAGCAGTGGTACCCTTAGCAATTTCTCCGGAGTAGAGGAAGATGACAGAGGGATGCAAATTGCTGAGGCTCTTAAATCACATGTTGAAGTCCAAAAAACAATACTAGAACAACTCGAGGTACAAAATAAACTACAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAATGCACAAAAGAGTCTGGCACTCGCCATTAACAGTAACCTTGGTAGTCTTGACCAAAGCACAGAAATGCAGTTAATAAACTTCGATGCGGCTCTGTCAGATCAAATTGAAAAATTTAAGAAACAAGAAATAAGAGGAAGTATAACAAACCTAAATGATGTTTGTAAGAAGACCGGTGATTCACTCATCCAGATATGCAAAATGGAGGCTGCAGAAGAAGACACAAACGAGTTTAATATCGAAAAGAATATGATCAACTTTGATTTGAATTCCAAAGGTGGCTATGATTACAGTGCAAACGGGGCTGAAATACTTGAGCCCAAAGTGCTTCCTTGTTCAAGGTAA 786 40.84 MERNYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQRNESSGTLSNFSGVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILENAQKSLALAINSNLGSLDQSTEMQLINFDAALSDQIEKFKKQEIRGSITNLNDVCKKTGDSLIQICKMEAAEEDTNEFNIEKNMINFDLNSKGGYDYSANGAEILEPKVLPCSR* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26150638 26156205 - CsaV3_3G030370.1 Csa03g02731 523636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02731 261 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Csa03g02731 261 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677
Csa03g02731 261 Pfam MYB-CC type transfactor, LHEQLE motif 105 152 IPR025756 -
Csa03g02731 261 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 248 IPR044848 GO:0003700
Csa03g02731 261 Gene3D - 17 74 - -
Csa03g02731 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Csa03g02731 261 SUPERFAMILY Homeodomain-like 18 75 IPR009057 -
Csa03g02731 261 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02731 Csa-Chr3:26150638 Csa03g03641 Csa-Chr3:32464112 9.35E-48 dispersed
Csa03g02731 Csa-Chr3:26150638 Csa06g01145 Csa-Chr6:9545350 4.85E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31292 PF00249 Myb_DNA-binding 2.70E-07 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02731 - - csv:101219098 516.924