Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02735 ATGGCACGGCTCATAAACAATCAGTTCAGTTTTGAAACGCCAGAAAATGAGGCTGTTATCACTAAAAAAATTCCTCGCTCTGAACGCACCAACAAGTATCCTAATTGGTATTCACCAGATACAGGAATTTGTCGTAGCGTCCATGGCTACAGAAAACTTCCCTCTGATCCATTTCTTGACGTTGTCTCCTTCATCTTCTCCTTCCAGTTCCAACACAATGGACATTCAGCTCTCATTGATTCCTCAACTGGAAATTCAATATCTTACAAAGAATTGTTTCCTATGGTAAAATCCATGGCTTCTGGCCTCCATAATTTAGGTATATCACAAGGGGATGTAGTTTTGCTTATGTTACCAAATTCAATTTTCTTTCCCATTATTATTTTGGGTGCCCTGTATTTGGGAGCTGTTGTTACAACCATGTTTCCTCAAAGCAGCTCCTCTGAAATCAAGAAACGAATTACTGATTGCAATGTGCGTTTGGCATTTGCAATAACTCAGAAAATCAAGAATTTTGAAGCATTGGGAATTAAGACAATTGGTGTACCAGAAAATACGAACTTCAACTTGATGAGGTCTATGGGATTTTCTTCTTTTTATGAACTTATTTCAGGTGGTTCTGATCTGATTAAAAAACCAGTGATCAGACAAGAAGATACAGCTGCTATATTGTTTTCTTCGGGTACTACTGGAGTGAGCAAAGGGGTTATGTTATCACATAGAAATTTTATATCTACCATCGAGCTTTTCGTTCGGTTTGAAGCTTCACAGTATGAATATTTGCCTACAAAGAATGTGTATTTGGCTGCTGTACCAATGTTTCATATCTATGGTCTCTCCATTTTTGTGATGGGATTAATGTCATTGGGGTCTAGTGTTGTTGTAATGAGCAAATTTGATGTCAAAGATGTGGTCAAGGCCATTGATAGATTTAAGGTCACACATTTTCCTGTTGTTCCACCTATATTGACAGCTTTGGCTAGGACTGCAGAGAAAATTGGTGTGCATAGATTTCGAAGTTTGAAACAAGTTTCTTGTGGGGCTGCTGCTTCAAGCAAGAAGACAATAGATAATTTTGTACACGCTCTCCCTCATGTTGACTTCATTCAGGGATATGGCATGACAGAGTCCACAGCTGTAGGAACCCGTGGTTTCAATACCAAAAATGCTAGAAATTATTTGTCAGTGGGACTTTTAGCTCCAAACACAGAAGCTAAGGTCGTCGATTGGGTTACTGGATCTTCCATGCCTCCTGGTAAAACCGGCGAACTTTTATTACGTGGACCTGGTTCAATGAAAGGGTACTTGAATAATCCAGAGGCAACAACGTTCACAATGGACCAAGAAAATTGGCTACATACGGGAGACATTGTCTACTTTGACCGAGATGGATACTTGTATGTTGTTGATCGCTTGAAGGAGGTTATAAAGTATAAAGGCTTTCAGATTGCACCTACAGATTTAGAAGCTGTAGTGATCACACATCCTGAAGTTCTTGATACTGCAGTAGCAGCGGCTAAAGATGAAGAATGTGGTGAAATTCCAGTGGCATTTGTGGTAAAGAAGCCAGGAAGTGCACTCACACAAAAAGATGTTGTTGATTATGTTGCTCAACAGGTTGCACCATATAAAAAAGTTAGAAAAGTGATTTTTACGGAATCAATACCAAAGTCTGCTGCTGGGAAAGTACTTCGAAGGGAACTACAGAAACACTTCCCAGCTTCTAAATTATGA 1734 39.39 MARLINNQFSFETPENEAVITKKIPRSERTNKYPNWYSPDTGICRSVHGYRKLPSDPFLDVVSFIFSFQFQHNGHSALIDSSTGNSISYKELFPMVKSMASGLHNLGISQGDVVLLMLPNSIFFPIIILGALYLGAVVTTMFPQSSSSEIKKRITDCNVRLAFAITQKIKNFEALGIKTIGVPENTNFNLMRSMGFSSFYELISGGSDLIKKPVIRQEDTAAILFSSGTTGVSKGVMLSHRNFISTIELFVRFEASQYEYLPTKNVYLAAVPMFHIYGLSIFVMGLMSLGSSVVVMSKFDVKDVVKAIDRFKVTHFPVVPPILTALARTAEKIGVHRFRSLKQVSCGAAASSKKTIDNFVHALPHVDFIQGYGMTESTAVGTRGFNTKNARNYLSVGLLAPNTEAKVVDWVTGSSMPPGKTGELLLRGPGSMKGYLNNPEATTFTMDQENWLHTGDIVYFDRDGYLYVVDRLKEVIKYKGFQIAPTDLEAVVITHPEVLDTAVAAAKDEECGEIPVAFVVKKPGSALTQKDVVDYVAQQVAPYKKVRKVIFTESIPKSAAGKVLRRELQKHFPASKL* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26182940 26193599 + CsaV3_3G030410.1 Csa03g02735 523640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02735 577 Pfam AMP-binding enzyme 71 478 IPR000873 -
Csa03g02735 577 Gene3D - 474 574 IPR045851 -
Csa03g02735 577 ProSitePatterns Putative AMP-binding domain signature. 223 234 IPR020845 -
Csa03g02735 577 Gene3D - 49 473 IPR042099 -
Csa03g02735 577 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 28 571 - -
Csa03g02735 577 CDD 4CL 53 568 - -
Csa03g02735 577 SUPERFAMILY Acetyl-CoA synthetase-like 40 572 - -
Csa03g02735 577 Pfam AMP-binding enzyme C-terminal domain 488 562 IPR025110 -
Csa03g02735 577 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 28 571 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02735 Csa-Chr3:26182940 Csa04g02685 Csa-Chr4:26054439 2.20E-155 dispersed
Csa03g02735 Csa-Chr3:26182940 Csa01g01352 Csa-Chr1:8805865 3.75E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02735 K01904 - csv:101219578 1132.09