Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02748 ATGCAACTGGTACCAAATCATGATGAGAATAAAGATGATATTCTGGAACGTGCGCCCATTTTAAGTCAATTGGATTTTCTGCCACAGTCTGTGGGGTCGTCATCCTCTGCTGAGATTGCTGAGATTATAGCTATAGGGAGAGAGAGCTCTGTTAGTGATGATGATTTACACAATCCTAACATTGATGAAACTTGTCATCTGGTGAATGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGCACTCAAAAGTATGTCCATAGATCTTGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTTGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAACTGATTGTGGCATTCTTAGGGGTGTTGGTGTATAAATTTTACGGAGAGGAACTAAGGGAAATGTTTGGCTATGAAGAACACCCATACGGGTTCTATGCCATGGCTGTCTTGGCTATCATCTTGGTTGGCTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTTCTCGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGTCATGTTATGGAGCTAAGGTTGTTGGGCCTGTATTAA 786 42.11 MQLVPNHDENKDDILERAPILSQLDFLPQSVGSSSSAEIAEIIAIGRESSVSDDDLHNPNIDETCHLVNDQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRLLGLY* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26340004 26341700 + CsaV3_3G030540.1 Csa03g02748 523653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02748 261 SMART ringv_2 73 122 IPR011016 GO:0008270
Csa03g02748 261 Pfam RING-variant domain 74 121 IPR011016 GO:0008270
Csa03g02748 261 PANTHER OS02G0132300 PROTEIN 2 259 - -
Csa03g02748 261 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 259 - -
Csa03g02748 261 ProSiteProfiles Zinc finger RING-CH-type profile. 66 128 IPR011016 GO:0008270
Csa03g02748 261 CDD RING_CH-C4HC3_MARCH 74 122 - -
Csa03g02748 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 126 IPR013083 -
Csa03g02748 261 SUPERFAMILY RING/U-box 70 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02748 Csa-Chr3:26340004 Csa06g03191 Csa-Chr6:27104140 5.88E-41 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02748 - - csv:101221632 523.857