Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02770 ATGTCTCGAAGATCGACTAGGTTAGTGGATAAGGCGAATAAACATTTTGAGAAAATCACAAGTAGTGTAACTACAAAATCATCTAGAAGTAACAGATATGTTGTATCTGAGGGAACCCTTAAAGCTCATAGAAGGAGTCAAAAGCGGACACCAAATAATGAGGTTAAGCTAAATGAAGTTATGTTTTCTCCATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACATACAATAAGAGGTCAATGGTCAAAAGAGCAACTGCTTCGAAGAATCTTAAGCCGGAGGAGGGTATCAACAAAAAAGGGAGTGGGAGGTTAAGAAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGACGATGTTTATGTGAGGAGGAGAGAAGATGCAAGCTCTGATGATGAAGATCCTGAAGTTGAGGAGTGTAGAGTGTGCTTTAAATCTGGAAATGCTATAATGATCGAGTGTGATGACTGTCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCTCCAGTGAAGGTGATCCCTGAGGGGGATTGGATTTGTGGGTTTTGTGAGGCTGCCAAAATGGGCAAAGAGGTTCAATTGCCAAAGCCTCCAGAGGGTAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTAGCAGGCGATTTGTGGGCTGCTCACATTGAAAGTATATGGAAAGAAGTAACGGGTAACTATCACTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACTGCAGCTGGAAGGCAACCGCATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTTTGCAGATATTGAGATGGAATCGCTTCTTAGACTGTGTGAAGTCATGAATCCGAAAGATTATTATAAAGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTTAAGAGGTTGGCTGAAATTGATAAAGAACAGGATAGTGAAGCAGTTGATAGTGACGCAGAGTGGAAGTTGGACCAGAATGTAGACTCTGATTCAGATGGTGACCTGGAATATGAAGAAGAGAGAGCACAAATTTTACTATCTCGAAACTACTCAAGCTCAACCCATGAATTAGCTGCAAATTCAAGGAAAGGACAATTTTGTGGACTACAAAAGATAGGAGCTAAGAAGATCCCAAAGCATACAAGATGTCATAAACAAACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCACTACCCAAGTCCCTACCGTGTAGAAATAAAGAAATTGAGGAGATAACTACATTTGTTGAAAGTGCTTTATGTGATGATCAATGCTTGGGTCGATGCTTGTACATCTATGGTGTTCCAGGAACAGGTAAGACAATGAGTGTGCTGTCGGTAATGAGAAACTTGCGGGCTAAAGTTGATACAGGAAATCTAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCAGCACCAGAAAATATATACAGAGTTATACATGAAGCATTAACTGGGCATAGGGTTAATTGGAAAAAGGCGCTTCAGTTGTTGACCAAACGTTTTTCAGACGTAAATTGTTGCAGGGATGATGAGCGACCTTGCATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAATTCTATACAACATTCTCGATTGGCCTACAAAGCCACAAGCCAAGTTGATTGTGATAGGAATTGCAAATACCATGGACCTACCAGAGAAGTTGCTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCCTATAACTATCAGCAACTTCAAGAAATTATTTTGAGCCGGCTTGAAGGAATCAATGCATTTGAGAAACAAGCTATTGAATTTGCATCGAGAAAGGTAGCTGCTATTTCAGGAGATGCACGTCGTGCTTTGGAGATATGTAGGCGTGCAGCTGAAATTACGGATTATCATTTAAAGAAGCATCATATGAAGCAGCTGAGTTTGATTTCCAACACTGCGAAAACACATGTTGGAATAGCTGAGGTGGAAACAGCGATCCAAGAAATGTTTCAAGCACCTCATATGCAAGTTATGAAGAGTTGTTCTAAGCAGAGCAAGATCTTCTTGACAGCCATGGTGCATGACTATTATAAAACGGGGTTGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTGTCTCAAATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCTCTTCTGAAAGTTGGCTGTAGGCTTGGTGAGTGCAGAATTATTTTATGTGAATCAGGGGCTAAACACCGGTTGCAAAAGTTACAGCTTAATGTTCCAAGTGATGACGTCTCATTTGCACTGAAAGATAGTAAGGATATACCTTGGTTGGCTAAGTATCTTTAA 2406 40.44 MSRRSTRLVDKANKHFEKITSSVTTKSSRSNRYVVSEGTLKAHRRSQKRTPNNEVKLNEVMFSPSFEQLEGKKRKTYNKRSMVKRATASKNLKPEEGINKKGSGRLRKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDDEDPEVEECRVCFKSGNAIMIECDDCLGGFHLKCLKPPVKVIPEGDWICGFCEAAKMGKEVQLPKPPEGKKRVRTMREKLLAGDLWAAHIESIWKEVTGNYHCKVRWYIIPEETAAGRQPHNLKRELYLTNDFADIEMESLLRLCEVMNPKDYYKAKEGDDIFLCEYEYDVRWHSFKRLAEIDKEQDSEAVDSDAEWKLDQNVDSDSDGDLEYEEERAQILLSRNYSSSTHELAANSRKGQFCGLQKIGAKKIPKHTRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFVESALCDDQCLGRCLYIYGVPGTGKTMSVLSVMRNLRAKVDTGNLRPHCFVEVNGLKLAAPENIYRVIHEALTGHRVNWKKALQLLTKRFSDVNCCRDDERPCILLIDELDLLVTRNQSILYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIILSRLEGINAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYHLKKHHMKQLSLISNTAKTHVGIAEVETAIQEMFQAPHMQVMKSCSKQSKIFLTAMVHDYYKTGLGEATFEKLAMTVSNLCTSNGEEFPGYDALLKVGCRLGECRIILCESGAKHRLQKLQLNVPSDDVSFALKDSKDIPWLAKYL* 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26531188 26533593 - CsaV3_3G030760.1 Csa03g02770 523675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02770 801 SMART PHD_3 147 192 IPR001965 -
Csa03g02770 801 MobiDBLite consensus disorder prediction 21 35 - -
Csa03g02770 801 SMART BAH_4 179 319 IPR001025 GO:0003682
Csa03g02770 801 ProSitePatterns Zinc finger PHD-type signature. 148 191 IPR019786 -
Csa03g02770 801 ProSiteProfiles Zinc finger PHD-type profile. 145 194 IPR019787 -
Csa03g02770 801 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 88 797 - -
Csa03g02770 801 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 88 797 IPR020793 -
Csa03g02770 801 Pfam ATPase family associated with various cellular activities (AAA) 448 594 IPR003959 GO:0005524|GO:0016887
Csa03g02770 801 Gene3D - 88 334 IPR043151 -
Csa03g02770 801 Pfam PHD-finger 148 193 IPR019787 -
Csa03g02770 801 SUPERFAMILY FYVE/PHD zinc finger 134 197 IPR011011 -
Csa03g02770 801 Pfam AAA lid domain 621 659 IPR041083 -
Csa03g02770 801 ProSiteProfiles BAH domain profile. 204 319 IPR001025 GO:0003682
Csa03g02770 801 CDD AAA 425 600 - -
Csa03g02770 801 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 212 IPR013083 -
Csa03g02770 801 Pfam BAH domain 228 316 IPR001025 GO:0003682
Csa03g02770 801 MobiDBLite consensus disorder prediction 21 52 - -
Csa03g02770 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 656 IPR027417 -
Csa03g02770 801 MobiDBLite consensus disorder prediction 38 52 - -
Csa03g02770 801 Gene3D - 400 596 IPR027417 -
Csa03g02770 801 Gene3D - 597 685 - -
Csa03g02770 801 SMART AAA_5 444 597 IPR003593 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02770 Csa-Chr3:26531188 Csa06g03859 Csa-Chr6:30586199 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31293 PF00004 AAA 7.10E-19 CL0023 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02770 K02603 - csv:101214082 1617.82