Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02792 ATGCTTCATTCAGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAATGTACCTAAAGTAAAATGTGAGGAGGAAGTTGATGAGGATAAGTTGAAATATCCGTTTCCTGAGTTAGTTTCTTGCGGACGATTGGAGGTTCGAGTTTTGGCAAATCCAAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTGCCCAGCTTTGTCTACTTGCAAGGGGAACAACTTGGAAATGATGAAATTGGGTCCTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATGCTGCACTACCAACCTTTGTGTATTTAGAAATCCCAGATGGAGGCAGAATTGCTGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATATATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTCATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGCGCTGCTTTTAGGCTTTATTCTGTGGGGAGCAATTATGGTCTGCCTGGGATTGCTGATGACAGTATGATGAGTGATCTAGAGCCACAGCTTATTGGGGAACCCCTAAAGATTGATGTAGAACCACCTGAGTTAGATGTAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAGCCCTCCCAGCCATAAATATTCATGATAATAATGTAACCATGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATACCTGCTTATTGAGATCATTGGAGGATGGCCTTGATGCACTTTTGAAGATTGAAATGCGTGGTAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCACCACCTCTTCAAGCGGGATCTTTTTCTCGTGGAGTTGTGACAATGCGATGTGATATAGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGTGCTCATACTTGTTTTGATGATCAGCTCCTGGAGAAACATATCAAACATGAAATCATAGAACACAACCAATTAGTTCATGCCATACATGATTGCGAAGGCAACAAGCATCACATGCACAAGCCTCGTAAGTCTGCTTCAATTGCATGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTTTTGAGGCAACTTGCACCTGATATCTCGTACCGGAGTTTAGTTGCACTCGGCATTGGGGGAGTTCAGGGTTTACCTGTTGCTTCTTTTGAGAAAGAGGATGCTGAGCGACTGCTCTTCTTTTGCTCAGGGGATGGGAATGATAAACATTCAGAGCAGTTGCTTGTAAGTGTGTTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATAAGGAATAGTCTTTCACATGACAGTCTTTCATATGCACACATCCCTGCCATTAGAAGAGTAGGTAGAGAAGACCCTGTACCAATGAATGGGTTCAAGGCATCCTTACACCCAGCGAGGAAAAAATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGGTTGCATAGGAATAAAATGACACCTTTTGCTGGATTGACTGAAGTAGATGGGAACAATGGAGGCCTATCCAAGGCTAGTTTATCCATTGTTACCCCACCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACACAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCTTTAAACCCACTCCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAGTTCTTGAAAGATGTTATGGAGTTTTTACTACTTAGAGGACATACACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCCATACTTAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAAGAGGTGGTCACCCGAGGAGGCTTTCACGTGGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTATACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGTCTTCTGTGCCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTTGGGTGTGATCGAAGGCAGGGCCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGTATTACAACTTACAAGAAGAAACCACACCGAGTAGCAAATGGGTCTCCGCAAGGAATAACAAATCCACGGATACCTTGA 2355 43.14 MLHSVVAARQTCSLLAVTCGNVPKVKCEEEVDEDKLKYPFPELVSCGRLEVRVLANPSKDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLSLEDLCGLFNAALPTFVYLEIPDGGRIAEALHSKGIPYLIYWNSTFSCYAAAHFRHALLSVVQSSSTHTWDAFQLARAAFRLYSVGSNYGLPGIADDSMMSDLEPQLIGEPLKIDVEPPELDVGEGEDEDGSLEALPAINIHDNNVTMRFLICGVPCTPDTCLLRSLEDGLDALLKIEMRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIEHNQLVHAIHDCEGNKHHMHKPRKSASIACGATVFEVSMKVPAWASQVLRQLAPDISYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDGNDKHSEQLLVSVLPSWFKPPTPSRKRVEPSQGIRNSLSHDSLSYAHIPAIRRVGREDPVPMNGFKASLHPARKKLKVASMRPVPRLHRNKMTPFAGLTEVDGNNGGLSKASLSIVTPPKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHTRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGITNPRIP* 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26764328 26771831 - CsaV3_3G030980.1 Csa03g02792 523697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02792 784 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677
Csa03g02792 784 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Csa03g02792 784 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Csa03g02792 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 767 IPR013083 -
Csa03g02792 784 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677
Csa03g02792 784 CDD ARID 599 697 - -
Csa03g02792 784 CDD PHD_ARID4_like 707 758 - -
Csa03g02792 784 Gene3D - 594 697 IPR036431 GO:0003677
Csa03g02792 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 773 - -
Csa03g02792 784 SMART ARID_2 594 697 - -
Csa03g02792 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 773 IPR042293 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02792 - - - csv:101215769 1582.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g02792 Csa07g02313 CCT
Csa03g02792 Csa07g02313 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02792 Csa-Chr3:26764328 Csa07g02313 Csa-Chr7:21463407 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00936 . 19 384 ARID Transcription Factor Family AT1G04880 56.2 7.2e-105 377.9
Csa03g00010 . 199 478 ARID Transcription Factor Family AT1G20910 60.5 3.0e-91 332.4
Csa04g02674 . 16 310 ARID Transcription Factor Family AT1G76110 68.2 2.1e-112 402.5
Csa03g00010 . 187 508 ARID Transcription Factor Family AT1G76510 60.5 2.7e-109 392.5
Csa03g02792 CCT,ECH 1 773 ARID Transcription Factor Family AT3G43240 59.8 1.1e-267 919.5
Csa07g02313 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 58.0 7.9e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31296 PF01388 ARID 5.70E-14 CL0123 Csa TR