Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02792 ATGCTTCATTCAGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAATGTACCTAAAGTAAAATGTGAGGAGGAAGTTGATGAGGATAAGTTGAAATATCCGTTTCCTGAGTTAGTTTCTTGCGGACGATTGGAGGTTCGAGTTTTGGCAAATCCAAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTGCCCAGCTTTGTCTACTTGCAAGGGGAACAACTTGGAAATGATGAAATTGGGTCCTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATGCTGCACTACCAACCTTTGTGTATTTAGAAATCCCAGATGGAGGCAGAATTGCTGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATATATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTCATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGCGCTGCTTTTAGGCTTTATTCTGTGGGGAGCAATTATGGTCTGCCTGGGATTGCTGATGACAGTATGATGAGTGATCTAGAGCCACAGCTTATTGGGGAACCCCTAAAGATTGATGTAGAACCACCTGAGTTAGATGTAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAGCCCTCCCAGCCATAAATATTCATGATAATAATGTAACCATGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATACCTGCTTATTGAGATCATTGGAGGATGGCCTTGATGCACTTTTGAAGATTGAAATGCGTGGTAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCACCACCTCTTCAAGCGGGATCTTTTTCTCGTGGAGTTGTGACAATGCGATGTGATATAGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGTGCTCATACTTGTTTTGATGATCAGCTCCTGGAGAAACATATCAAACATGAAATCATAGAACACAACCAATTAGTTCATGCCATACATGATTGCGAAGGCAACAAGCATCACATGCACAAGCCTCGTAAGTCTGCTTCAATTGCATGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTTTTGAGGCAACTTGCACCTGATATCTCGTACCGGAGTTTAGTTGCACTCGGCATTGGGGGAGTTCAGGGTTTACCTGTTGCTTCTTTTGAGAAAGAGGATGCTGAGCGACTGCTCTTCTTTTGCTCAGGGGATGGGAATGATAAACATTCAGAGCAGTTGCTTGTAAGTGTGTTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATAAGGAATAGTCTTTCACATGACAGTCTTTCATATGCACACATCCCTGCCATTAGAAGAGTAGGTAGAGAAGACCCTGTACCAATGAATGGGTTCAAGGCATCCTTACACCCAGCGAGGAAAAAATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGGTTGCATAGGAATAAAATGACACCTTTTGCTGGATTGACTGAAGTAGATGGGAACAATGGAGGCCTATCCAAGGCTAGTTTATCCATTGTTACCCCACCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACACAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCTTTAAACCCACTCCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAGTTCTTGAAAGATGTTATGGAGTTTTTACTACTTAGAGGACATACACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCCATACTTAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAAGAGGTGGTCACCCGAGGAGGCTTTCACGTGGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTATACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGTCTTCTGTGCCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTTGGGTGTGATCGAAGGCAGGGCCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGTATTACAACTTACAAGAAGAAACCACACCGAGTAGCAAATGGGTCTCCGCAAGGAATAACAAATCCACGGATACCTTGA 2355 43.14 MLHSVVAARQTCSLLAVTCGNVPKVKCEEEVDEDKLKYPFPELVSCGRLEVRVLANPSKDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLSLEDLCGLFNAALPTFVYLEIPDGGRIAEALHSKGIPYLIYWNSTFSCYAAAHFRHALLSVVQSSSTHTWDAFQLARAAFRLYSVGSNYGLPGIADDSMMSDLEPQLIGEPLKIDVEPPELDVGEGEDEDGSLEALPAINIHDNNVTMRFLICGVPCTPDTCLLRSLEDGLDALLKIEMRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIEHNQLVHAIHDCEGNKHHMHKPRKSASIACGATVFEVSMKVPAWASQVLRQLAPDISYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDGNDKHSEQLLVSVLPSWFKPPTPSRKRVEPSQGIRNSLSHDSLSYAHIPAIRRVGREDPVPMNGFKASLHPARKKLKVASMRPVPRLHRNKMTPFAGLTEVDGNNGGLSKASLSIVTPPKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHTRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGITNPRIP* 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26764328 26771831 - CsaV3_3G030980.1 Csa03g02792 523697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02792 784 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677
Csa03g02792 784 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Csa03g02792 784 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Csa03g02792 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 767 IPR013083 -
Csa03g02792 784 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677
Csa03g02792 784 CDD ARID 599 697 - -
Csa03g02792 784 CDD PHD_ARID4_like 707 758 - -
Csa03g02792 784 Gene3D - 594 697 IPR036431 GO:0003677
Csa03g02792 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 773 - -
Csa03g02792 784 SMART ARID_2 594 697 - -
Csa03g02792 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 773 IPR042293 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g02792 Csa07g02313 CCT
Csa03g02792 Csa07g02313 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02792 Csa-Chr3:26764328 Csa07g02313 Csa-Chr7:21463407 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31296 PF01388 ARID 5.70E-14 CL0123 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02792 - - csv:101215769 1582.39