Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02796 ATGGATACTGTCAAGTCCTTCAAGGGCTACGGCAAGGTCGACGAACTCGAGCAACAAGCTTTCCGGCAAAAGACTCGCCGCCGCCTTATTATTATCTTTATTTCCCTTCTTCTTCTAATTGCCCTCCTTGTCGGTGCCGTCGTTGGAATCGTCGTTCATAAACGCAACTCTTCTTCTTCATCCACCACCACCTCACCTCCTCCCACTGAGCTCACTCCCCCTGCCTCACTCAAAACTCTCTGTAGTGTCACTCAGTATCCCAGTTCCTGTCAATCCTCTCTCCAAAACTCCAATACCACCGATCCGGTATTTCTCTTTAAGCTTTCTCTCCGAGTCGCCACTGATTCACTCTCGAAGCTCTCTGATTATACGTCTAATTTCAATTCCACTACTGGAGATCCTAAGGTTGAAGCTGCAATTAAAATTTGCCGGAGTGTTTTTGAAGATGCCATTGATACGTTAAACGATACCGTTTCGTCTATGGAAGTGGATCGTCATAGTGAGAAGTTCTTGTCGCCTTCTAGGATTGAAGATCTGAAAACCTGGCTGAGTACTACAATCACAGATCAAGAAACCTGCCTTGACGCTCTTCGAGATCTAAACCAGACCACGGTTCTTCAGGACTTGCAAACTGCAATGGCGAACTCTACCGAGTTTACTAGCAATAGTTTAGCGATTGTAACGAAAATACTTGGGTTGTTGGCCGATTTCAACATTCCTATCCACCGGAAATTGATGGGATTACCGGAGTGGGTAAGCTCTGGCGACCGAAGGCTTCTGCAGGAGAACAATGTGACGGCGCATGTGACGGTATCGAAGGATGGGAAAGGGCAATACACGACAATCCAAGATGCCGTAGCGGCGGTGCCAAAGAAGAGCAAAGAAAGATTCATCATACATGTAAAAGAAGGAATATACGAAGAGAATGTGATTCTGGACAAGAGCAAGTGGAATGTTATGATGTATGGAGATGGCAGAACAAAAACCATTGTTTCCGGCCACCTGAACTTCATCGACGGCACTCCCACCTTCTCCACCGCCACTTTTGCTGTTGCTGGCAAAGGGTTCATTGGGAAGGACATGGGGTTCATCAACACGGCGGGTCCAGCCAAGCACCAGGCCGTTGCCTTCCGGTCGGGCTCTGACCTCTCTGTGATGTCTGGATGTTCATTTGATGGCTATCAAGACACTCTCTACGCCCACTCAAACCGTCAGTTCTACCGAGACTGCGATATCACCGGCACCATCGACTTCATCTTCGGCAACGCCGCGGTGGTATTCCAGAACTGCAACATCCGGCCGAGGCAGCCACTTCCCAACCAATTTAACACCATCACAGCCCAAGGTAAGAAGGACATCAATCAAAATTCCGGCATTTCGATTCAGAAATGCACCTTTTCAGCCTACAATGACAGTCTCAACGCCCCCACTTATTTGGGGCGGCCATGGAAGGAGTTTTCTACAACGGTGATTATGCGGTCGGAAATCGGAGGATTCCTGAATCCGGTTGGGTGGAAGGAATGGGTGAGCGGGCAGGACCCACCCAGCAGCATATTTTATGGGGAGTATCAGAATAGTGGGCCAGGATCAAACGTGGACAAGAGGGTTAGATGGGCCGGTTACAAGCCCAGTCTTACGGATTCCGAGGCCGGAAGGTTCACCGTTGGGACTTTCCTGAACGGCGAGGATTGGTTGCCGGCTACCAATGTAAACTTTGATACATCTCTGTAA 1731 48.99 MDTVKSFKGYGKVDELEQQAFRQKTRRRLIIIFISLLLLIALLVGAVVGIVVHKRNSSSSSTTTSPPPTELTPPASLKTLCSVTQYPSSCQSSLQNSNTTDPVFLFKLSLRVATDSLSKLSDYTSNFNSTTGDPKVEAAIKICRSVFEDAIDTLNDTVSSMEVDRHSEKFLSPSRIEDLKTWLSTTITDQETCLDALRDLNQTTVLQDLQTAMANSTEFTSNSLAIVTKILGLLADFNIPIHRKLMGLPEWVSSGDRRLLQENNVTAHVTVSKDGKGQYTTIQDAVAAVPKKSKERFIIHVKEGIYEENVILDKSKWNVMMYGDGRTKTIVSGHLNFIDGTPTFSTATFAVAGKGFIGKDMGFINTAGPAKHQAVAFRSGSDLSVMSGCSFDGYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIRPRQPLPNQFNTITAQGKKDINQNSGISIQKCTFSAYNDSLNAPTYLGRPWKEFSTTVIMRSEIGGFLNPVGWKEWVSGQDPPSSIFYGEYQNSGPGSNVDKRVRWAGYKPSLTDSEAGRFTVGTFLNGEDWLPATNVNFDTSL* 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26809996 26812741 - CsaV3_3G031020.1 Csa03g02796 523701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02796 576 Pfam Pectinesterase 268 561 IPR000070 GO:0030599|GO:0042545
Csa03g02796 576 SUPERFAMILY Pectin lyase-like 266 573 IPR011050 -
Csa03g02796 576 Gene3D - 262 576 IPR012334 -
Csa03g02796 576 PANTHER PECTINESTERASE 1-RELATED 8 573 - -
Csa03g02796 576 CDD PMEI-like_3 79 230 - -
Csa03g02796 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 62 230 IPR006501 GO:0004857
Csa03g02796 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 230 IPR035513 -
Csa03g02796 576 Pfam Plant invertase/pectin methylesterase inhibitor 77 226 IPR006501 GO:0004857
Csa03g02796 576 PANTHER PECTINESTERASE 8 573 - -
Csa03g02796 576 SMART PMEI_2 72 226 IPR006501 GO:0004857
Csa03g02796 576 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Csa03g02796 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 231 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02796 Csa-Chr3:26809996 Csa06g01790 Csa-Chr6:15830169 1.58E-138 dispersed
Csa01g00530 Csa-Chr1:3505327 Csa03g02796 Csa-Chr3:26809996 2.69E-29 transposed
Csa01g02621 Csa-Chr1:23197757 Csa03g02796 Csa-Chr3:26809996 1.94E-167 transposed
Csa03g02796 Csa-Chr3:26809996 Csa07g02304 Csa-Chr7:21412382 5.32E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02796 - - csv:101207508 1112.06