Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02798 ATGTCAAAACCCGACGACACCCCCGCCGCCGGAGTTCCATTCTCCGGCTACTCAAAAACCAACCTCTTGGTCTTCGCCCTCTCAACAACGCTTCTCCTCGCAGTCGTCTCCTCCGACGACCACGTGGGAAGCAAGTGCGCCATGACACTATACCCCGAGCTTTGCGAGACGACGATATCCACCGCCGTGGGAAGTAGTTCAAAAGAGGCAATCGAAGCGTCGGTGAACATTACGATTAGTGCAGTGAAGGATAATTATAAAAGGGTGCAGAAATTGCTTAAGACAGTGAAGAATCTGACGAAACGACAGAAGATTGCATTTCATGACTGTTTGGAAACGGGGGAAGAGACGCTGAGAGAGCTTTATGAAGTTGTTGAAGATGTTAATGAGTATCCTAAGAAAAAATCTCTCTCACGCTACGCTGATGACCTCAAAACTTTACTCAGTTCCACCATTACTAATCAGGAGACATGCGTGGACGGATTCTCACACGACAAAGGCGATAAAAAAGTACGAGAGTCATTAAAAGAAGGCCTTATTCACATTGAAAAGCTTTGCAGCATTGCTTTAGCCTTGATTAAGAACCTTACCGACACGGACATTGCCAATCTCAACAACAACAATAATAATAACCACCTCAACCGAAAGCAACTGGAGGAAAAGAAGATGGAGGATGGAATTAAGTGGCCAGATTGGATGTCACCCAAGGATCGAAGGCTTTTGCAAGCCTCGTCTACAGCCACTCCCGACGTGGTAGTAGCAGCCGACGGGAGCGGAGATTTTCGGACAATTTCTGAGGCAGTTGCGGCTGCGCCTAGTAGAAGTAGCCGGAGGTATATAATAAGAATAAAGGCAGGTGTTTATAGAGAAAATGTGAATGTGGCAAGTAGTAAGAGGAATATAATGTTTTGGGGAGATGGAAGGGTTAACACTATAATCACCGGGAATAGAAATGTGGTCGATGGCAGCACTACCTTCAACTCCGCCACCGTTGCGGCGGTAGGAGAAAGGTTCTTGGCGAGAGACGTTACATTTCAGAACACCGCCGGTCCATCAAAGCACCAAGCCGTGGCTCTCCGAGTTGGCTCCGACCTCTCTGCTTTTTACCGCTGCGACATGCTCGCCTATCAAGACACACTCTACGTCCATTCCAACCGTCAATTCTACGTCCAGTGCATCATCGTCGGCACCATCGACTTCATCTTCGGCAATGCCGCCGCCGTCATCCAAGACTGTGACATCCACGCCCGCCGCCCCAATCCCGGCCAGAGGAACATGGTCACTGCACAAGGAAGAACAGACCCAAATCAAAACACTGGGATTGTCATCCAGAAATGCCGAATCGGAACCACCTCCGATTTGCGGCCAGTGATCAGCAATTTCCCGACGTTTCTGGGGCGGCCGTGGCAGAGATACTCGAGAACGGTGGTTATGCAGACGAGTATTAGCAATGTGATTGATCCAGCGGGGTGGCATGTTTGGGATGGGAATTTTGCGCTTGATACTCTGTTTTATGCAGAGTATCAGAATAGTGGTGCGGGTGCCGATACGTCGAGGAGAGTGAAGTGGAAGGGGTTTAGGGTTCTTACCAGGGCGGCGGAAGCGGAGGCCTTCACGGCGGGGAATTTCATCGGCGGCGGGACCTGGCTGAGCTCTACAGGATTCCCATTTTCACTTGGGTTGTAA 1686 49.88 MSKPDDTPAAGVPFSGYSKTNLLVFALSTTLLLAVVSSDDHVGSKCAMTLYPELCETTISTAVGSSSKEAIEASVNITISAVKDNYKRVQKLLKTVKNLTKRQKIAFHDCLETGEETLRELYEVVEDVNEYPKKKSLSRYADDLKTLLSSTITNQETCVDGFSHDKGDKKVRESLKEGLIHIEKLCSIALALIKNLTDTDIANLNNNNNNNHLNRKQLEEKKMEDGIKWPDWMSPKDRRLLQASSTATPDVVVAADGSGDFRTISEAVAAAPSRSSRRYIIRIKAGVYRENVNVASSKRNIMFWGDGRVNTIITGNRNVVDGSTTFNSATVAAVGERFLARDVTFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYVQCIIVGTIDFIFGNAAAVIQDCDIHARRPNPGQRNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLRPVISNFPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHVWDGNFALDTLFYAEYQNSGAGADTSRRVKWKGFRVLTRAAEAEAFTAGNFIGGGTWLSSTGFPFSLGL* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26823594 26827365 - CsaV3_3G031040.1 Csa03g02798 523703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02798 561 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 197 IPR006501 GO:0004857
Csa03g02798 561 PANTHER PECTINESTERASE 40 560 - -
Csa03g02798 561 Pfam Pectinesterase 250 546 IPR000070 GO:0030599|GO:0042545
Csa03g02798 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 197 IPR035513 -
Csa03g02798 561 PANTHER PECTINESTERASE 40 560 - -
Csa03g02798 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 198 IPR035513 -
Csa03g02798 561 ProSitePatterns Pectinesterase signature 1. 275 294 IPR018040 -
Csa03g02798 561 SUPERFAMILY Pectin lyase-like 244 560 IPR011050 -
Csa03g02798 561 Coils Coil 201 221 - -
Csa03g02798 561 CDD PMEI-like_3 46 197 - -
Csa03g02798 561 Gene3D - 244 561 IPR012334 -
Csa03g02798 561 Pfam Plant invertase/pectin methylesterase inhibitor 44 192 IPR006501 GO:0004857
Csa03g02798 561 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Csa03g02798 561 SMART PMEI_2 37 192 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g02798 Csa07g02304 CCT
Csa03g02798 Csa07g02304 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02798 Csa-Chr3:26823594 Csa07g01531 Csa-Chr7:15672436 0 dispersed
Csa03g02798 Csa-Chr3:26823594 Csa07g02304 Csa-Chr7:21412382 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02798 K01051 - csv:101207996 1061.6