Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02807 ATGGTGAAGAAGTGGAGTTGGGGAGAGCCGTTGCTGCTAGTCAGTATCTGCATTTTGGGATGGAGGATTAGTTTTATCAATGGAGCTACGGATCCAGGAGATGTATCGGCTCTAAATGCCATGTATACTAGTTTAAACTCTCCTCCAATTCTAACACAATGGAGTTCGAGTGGTGGAGATCCATGTGGACAAATTTGGAAAGGCATTACTTGCTTGGGCTTAAGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGAACACTGGGATACCAGCTCTCAAGTTTGACATCCCTAACTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAGCTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTTGCTTATTTCCTTGAACATGAGCCACAATCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGGCCATGTTGGACGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTCTTAACGCTATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGTTGGGTTCCTGAACGATTGAAGAATATAAATATTCAGGAGGGAGGAAATTCTTGGAGCTTTGGGCTTGCGCCCCCACCTCCGCCTGGGACTCCTCCAGCCAACCAAAATTACAGATATCACAAGGCAGGGAACAGTTACAGCCCACTGAGTAGTGATGCTGCTGGTGGGGGTAGCAATAGATCAGGAATCGGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTGGTAGGAGCAATACTAGCATATCTTCTAGCAAAGAGGAGATCCAAGAGGCCATCCACAGACATAGAAAAGCAAAAGCATGGGAACTTGCCTATTGTATCTCCTGCTTCAAATGAAGTGCAAGACGCGTTGGCAGAGATGAAGCTTGTTCATACTTCATCCTCATTTGATGCAAAAGAATTGGACTCTCCTGCTTCAATCAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTTGATGACAATGATACATCAAAGGTACCTGTGGTGAAGAAGACCAATGTCACTGCTCCCATAAGTGTGAAATCATATTCAATAGCAGATCTGCAAATGGCTACAGGTAGTTTCAATGTAGAAAACCTTCTTGGTGAGGGACCACTTGGACGTGTTTATCGGGCTCAGTTCAACGATGGGAAGGTTCTTGCAGTGAAGAAAATAGATTCAGCTGCCTTCCATAGAGAATTGTTGGAAGATTTCACAGAGATCGTTGCTAATATATCTCAGCTGCATCATCCTAATGTAACCGAGCTAACAGGCTATTGCTCAGAGCATGGCCTGCATTTGCTAATATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTAGGGACGGCCCGTGCTTTAGAGTACCTACATGAAGTTTGTGCCCCCTCAGTTGTTCACAGAAATATCAAGTCAGCCAATATCTTACTAGATGCTGAAATGAATCCTCATCTCTCCGATTGTGGTCTGGCTAGCTTTATAACCAATCTAGATCACGCATTGGATCAACAGGCAGGATCTGGGTACAGTGCTCCTGAGGTTACCATGTCTGGTCAATATACATTAAAAAGCGACGTATATAGTTTTGGAGTGGTGATGTTAGAACTTCTAAGCGGACGTAAGCCATTTGATAGTTCAAGGCCAAGGGCTGAGCAATCCTTGGTTCGATGGGCTACGCCTCAGCTCCATGATATCGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGGCTCTACCCAGTTAAGTCTCTCTCGAGATTTGCAGACGTTGTAGCTCTTTGCGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCAGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACGTTTGGAAGTGATCATGGATCATCTTTTAGAACTGATGATCTTGAAGCACGTGAAACATCTTAA 2181 43.74 MVKKWSWGEPLLLVSICILGWRISFINGATDPGDVSALNAMYTSLNSPPILTQWSSSGGDPCGQIWKGITCLGLRVTEISLSGLGLSGTLGYQLSSLTSLTNLDVSNNNLGPDIPYQLPQNLQKLNLGWNNFSGSIPYSISQMSLLISLNMSHNQLQNQVNDMFWKLSSLAMLDVSFNFLSGALPQSFSNLTSLNAMFLQNNQFSGTIDVLANLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKAGNSYSPLSSDAAGGGSNRSGIGGGAIAGILISVLVVGAILAYLLAKRRSKRPSTDIEKQKHGNLPIVSPASNEVQDALAEMKLVHTSSSFDAKELDSPASINLKPPPIDRHKSFDDNDTSKVPVVKKTNVTAPISVKSYSIADLQMATGSFNVENLLGEGPLGRVYRAQFNDGKVLAVKKIDSAAFHRELLEDFTEIVANISQLHHPNVTELTGYCSEHGLHLLIYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAEMNPHLSDCGLASFITNLDHALDQQAGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDLEARETS* 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26882602 26891283 - CsaV3_3G031130.1 Csa03g02807 523712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02807 726 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Csa03g02807 726 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672|GO:0006468
Csa03g02807 726 SUPERFAMILY L domain-like 30 236 - -
Csa03g02807 726 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 20 720 - -
Csa03g02807 726 MobiDBLite consensus disorder prediction 370 390 - -
Csa03g02807 726 Gene3D Phosphorylase Kinase; domain 1 382 498 - -
Csa03g02807 726 PANTHER OS01G0253100 PROTEIN 20 720 IPR045271 GO:0004714|GO:0006468
Csa03g02807 726 SUPERFAMILY Protein kinase-like (PK-like) 402 693 IPR011009 -
Csa03g02807 726 SMART LRR_typ_2 97 121 IPR003591 -
Csa03g02807 726 SMART LRR_typ_2 143 166 IPR003591 -
Csa03g02807 726 SMART LRR_typ_2 167 190 IPR003591 -
Csa03g02807 726 MobiDBLite consensus disorder prediction 705 726 - -
Csa03g02807 726 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02807 726 Gene3D Ribonuclease Inhibitor 31 250 IPR032675 -
Csa03g02807 726 Pfam Leucine rich repeat 121 178 IPR001611 GO:0005515
Csa03g02807 726 Gene3D Transferase(Phosphotransferase) domain 1 500 717 - -
Csa03g02807 726 MobiDBLite consensus disorder prediction 245 270 - -
Csa03g02807 726 MobiDBLite consensus disorder prediction 711 726 - -
Csa03g02807 726 CDD STKc_IRAK 427 696 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02807 - - - csv:101208239 1400.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g02807 Csa07g02300 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02807 Csa-Chr3:26882602 Csa06g03601 Csa-Chr6:29085557 7.76E-168 dispersed
Csa01g03495 Csa-Chr1:31905787 Csa03g02807 Csa-Chr3:26882602 0 transposed
Csa06g00324 Csa-Chr6:2405503 Csa03g02807 Csa-Chr3:26882602 0 transposed
Csa06g03658 Csa-Chr6:29410431 Csa03g02807 Csa-Chr3:26882602 1.59E-44 transposed
Csa03g02807 Csa-Chr3:26882602 Csa07g02300 Csa-Chr7:21374921 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g7 Blo05g00016 . . . . . . Bma13g01189 Cmo08g00808 Cmo17g00626 Cma01g00022 . Car01g00018 Car14g01082 . Cpe12g00545 Cpe17g00420 Bhi01g02818 . . . . . . . . . . . . . . Cone17ag0031 . . Lsi02g02850 Csa07g02300 . Cme01g02755 . Blo10g00947 . . . Bpe09g00053 Bma09g01001 . . Cmo01g00024 . Cma08g00837 Cma17g00644 Car08g00721 Car17g00608 Cpe02g01752 . Bhi09g00253 . . . . . . Cla09g00135 . . . . . . . Csa03g02807 Chy01g02121 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g00420 . 31 790 Strubbelig Receptor Gene Family AT4G03390 62.3 4.6e-208 721.5
Csa06g03601 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.4 1.0e-159 560.8
Csa07g02300 CCT 382 689 Strubbelig Receptor Gene Family AT4G03390 56.2 1.1e-89 328.2
Csa03g03592 . 17 736 Strubbelig Receptor Gene Family AT5G06820 53.3 7.0e-182 634.4
Csa03g03593 . 18 704 Strubbelig Receptor Gene Family AT5G06820 50.7 8.6e-164 574.3
Csa06g00324 . 22 697 Strubbelig Receptor Gene Family AT1G78980 60.6 1.7e-193 672.9
Csa03g02807 CCT 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Csa07g02300 CCT 24 692 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-125 446.4
Csa06g00324 . 20 674 Strubbelig Receptor Gene Family AT3G13065 51.2 5.1e-142 501.9
Csa01g03495 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.3e-84 311.2
Csa03g03592 . 17 736 Strubbelig Receptor Gene Family AT5G06820 53.3 7.0e-182 634.4
Csa03g03593 . 18 704 Strubbelig Receptor Gene Family AT5G06820 50.7 8.6e-164 574.3
Csa07g00420 . 31 790 Strubbelig Receptor Gene Family AT4G03390 62.3 4.6e-208 721.5
Csa06g03601 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.4 1.0e-159 560.8
Csa07g02300 CCT 382 689 Strubbelig Receptor Gene Family AT4G03390 56.2 1.1e-89 328.2
Csa06g00324 . 20 674 Strubbelig Receptor Gene Family AT3G13065 51.2 5.1e-142 501.9
Csa06g00324 . 22 697 Strubbelig Receptor Gene Family AT1G78980 60.6 1.7e-193 672.9
Csa03g02807 CCT 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Csa07g02300 CCT 24 692 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-125 446.4
Csa03g02807 CCT 1 719 Strubbelig Receptor Gene Family AT1G53730 59.7 1.0e-214 743.4
Csa07g02300 CCT 1 714 Strubbelig Receptor Gene Family AT1G53730 59.7 1.1e-184 643.7
Csa06g00324 . 15 682 Strubbelig Receptor Gene Family AT1G53730 52.0 4.0e-158 555.4
Csa03g02807 CCT 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 1.2e-188 656.8
Csa07g02300 CCT 6 704 Strubbelig Receptor Gene Family AT3G14350 56.0 5.7e-170 594.7
Csa04g00359 . 21 203 Strubbelig Receptor Gene Family AT3G14350 51.1 2.0e-42 171.0
Csa01g03495 . 138 712 Strubbelig Receptor Gene Family AT4G22130 61.3 1.5e-184 642.9
Csa03g02807 CCT 398 726 Strubbelig Receptor Gene Family AT4G22130 63.1 1.2e-120 430.6
Csa07g02300 CCT 391 706 Strubbelig Receptor Gene Family AT4G22130 64.2 5.1e-116 415.2
Csa07g00420 . 458 782 Strubbelig Receptor Gene Family AT4G22130 58.0 3.3e-107 386.0
Csa06g03601 . 464 752 Strubbelig Receptor Gene Family AT4G22130 60.8 5.1e-100 362.1
Csa06g00324 . 386 696 Strubbelig Receptor Gene Family AT4G22130 55.9 2.8e-98 356.3
Csa03g03592 . 387 702 Strubbelig Receptor Gene Family AT4G22130 50.6 9.4e-86 314.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78014 PF07714 PK_Tyr_Ser-Thr 5.50E-42 CL0016 Csa PK