Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02811 ATGGGATCAACAGAGGAGAAAACAAATTACTTATCAGATGAAGAAATTCCATTGAAGTCATCGCCAGTTGCGAAGAACGTATTGCATAGTTTTGATTGTGAGACGGCTGCTGTGCGTTCTTCCCCAGATACAAGATGGTGGAAGACTAGCAACATTCGTATTAGACCTCTTAGAAGTGCTTATATAGTGTTGGTTAGAGCAAAGATCAACGTGTTGCTACCTTTTGGTCCTTTGGCAATTCTGCTACATTACTTAACGGGAAAGCATGGATGGGTCTTCTTTTTCACTTTACTTGGAATTACACCCTTGGCAGAACGTCTTGGTTATGCAACTGAGCAGCTTGCTTTCTACACTGGACCAACAGTTGGTGGTCTTTTGAATGCAACATTTGGAAATGCAACTGAAATGATCATATCAATATATGCGTTAAAGAGTGGGATGATTAGGGTTGTTCAACAGTCATTGCTGGGGTCAATCTTGTCAAATATGCTCCTTGTGCTTGGTTGCGCTTTTTTCACTGGTGGGATTATTCATCATACAAAGGTGCAGGTTTTCAATAAGGGTGCTGCTGTTGTAAATTCAGGATTGTTGTTGATGGCTGTAATGGGAACGACTTTTCCGGCCGTGCTTCATTTCACCCACACAGAACTTCATTTGGGAGAGTCAGCATTATCTCTTTCAAGATTTAGCAGTTGTATAATGTTAATTGCATATGCAAGCTACCTTTTCTTTCAACTAAAAAGTCAGCATGATCTCTATGGTCCTCTTGACGAGGAAGTTGATGGAGAAGTTGAGGACGATTCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCCATCTTGACTGTATGGGTATCTGTTTTATCTGGATACCTTGTTGATGCTATCCAGGGAGCATCTGAATCATTAAATTTGCCAGTGGCATTTATTAGTGTAATTTTGTTGCCAATTGTTGGAAATGCTGCTGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTGACATCACTCTTGGAGTTGCTATTGGATCATCTACACAAATATCCATGTTTGTGATCCCGTTTTGCGTAGTAGTTGGATGGTGCATGGGAAAACCAATGGACTTAAACTTCAAACTCTTTGAAACAGCAACGTTGTTCATCACTGTGCTAGTAGTGGCCTTTATGTTGCAGGAGGGGACATCAAATTATTTCAAAGGTCTGATGCTTATTCTATGTTATCTCATAGTGGCAGCCAGTTTTTTTGTACACGTTGATCCTAGTAATGATGATTAA 1284 40.34 MGSTEEKTNYLSDEEIPLKSSPVAKNVLHSFDCETAAVRSSPDTRWWKTSNIRIRPLRSAYIVLVRAKINVLLPFGPLAILLHYLTGKHGWVFFFTLLGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIIHHTKVQVFNKGAAVVNSGLLLMAVMGTTFPAVLHFTHTELHLGESALSLSRFSSCIMLIAYASYLFFQLKSQHDLYGPLDEEVDGEVEDDSEIYAWEAIGWLAILTVWVSVLSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGKPMDLNFKLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPSNDD* 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26947129 26951577 - CsaV3_3G031170.1 Csa03g02811 523716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02811 427 Gene3D - 120 419 IPR044880 -
Csa03g02811 427 Pfam Sodium/calcium exchanger protein 91 246 IPR004837 GO:0016021|GO:0055085
Csa03g02811 427 Pfam Sodium/calcium exchanger protein 276 415 IPR004837 GO:0016021|GO:0055085
Csa03g02811 427 TIGRFAM cax: calcium/proton exchanger 72 418 IPR004798 GO:0006816|GO:0015369
Csa03g02811 427 PANTHER VACUOLAR CATION/PROTON EXCHANGER 1 426 - -
Csa03g02811 427 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 1 426 IPR004713 GO:0006812|GO:0008324|GO:0016021
Csa03g02811 427 TIGRFAM caca2: calcium/proton exchanger 63 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00398 Csa-Chr3:3354246 Csa03g02811 Csa-Chr3:26947129 0 dispersed
Csa03g02811 Csa-Chr3:26947129 Csa03g03075 Csa-Chr3:28931882 2.42E-103 dispersed
Csa03g02811 Csa-Chr3:26947129 Csa06g00979 Csa-Chr6:7944528 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02811 K07300 - csv:101219432 839.721