Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02812 ATGAGACCTTTCCAGCCGCCTCCAGCTACAAATCCTCCCACCGATCGTACTCGTCGCCGTCCCCATCTAAATCTCCATCTTCCTCAACGTGACAACACATCTTTGGCTGTTCCTCTTCCTTTGCCTCCTACCTCCTCCAACTCTGCCCCTCCTCCTTCCACCAGTCAACTCCACAACGCCAATCGCCCCCCTGACCCTCTTCCTCCCCAACGTCACCCTTTCACCCTTTCTGACTTTGAGCGTGTCAGCCGAATCGGAAGTGGATGTGGAGGTACCGTTTACAAAGTCCTTCACCGTCCCACCGGTCATGTTTATGCTCTCAAGGTCATTTACGGAAACCATGAAGATGCGGTTAGGCTTCAGATGTGCCGCGAGGTCGAGATCCTTCGTGACGTTGACAATCCCTATGTTGTTAAGTGCCACGATATGTTTGATCATAACGGTGAAATCCAGATTCTTAGCGGTCTTGCTTATCTTCATAGCCGACGTATCGTTCATCGCGATATCAAACCCTCCAATCTTCTCATCAATTCTCGAAGGCAGGTTAAGATCGCTGATTTTGGCGTCGGTCGAATCTTGGAACAGACTATGGACCCTTGTAATTCCTCGGTTGGGACTATTGCGTATATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGTCAGTACAATGGTTATGCAGGGGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTGGGTCGCTTTCCTCTTGCTGTTGAGAGGCCTGGGGATTGGGCTAGCTTGATGTGTGCTATATGTATGGCTCAGCCACCGGAGGCCCCGGCCACTGCTTCACCGGAGTTTCGTCACTTTATTGCTTGTTGTTTGCAAAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAGCATGCGTTCATAACAAGGAAAAATGGAGCAAGTCAGTACCAGAACAAGCAAGCTCATCATCAGAATCTTCGTCAACTTTTACCTCCTCCGCCTCTTCATCCTCCCAGCCTTTCTTGA 1023 49.56 MRPFQPPPATNPPTDRTRRRPHLNLHLPQRDNTSLAVPLPLPPTSSNSAPPPSTSQLHNANRPPDPLPPQRHPFTLSDFERVSRIGSGCGGTVYKVLHRPTGHVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPATASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGASQYQNKQAHHQNLRQLLPPPPLHPPSLS* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26953475 26954580 - CsaV3_3G031180.1 Csa03g02812 523717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02812 340 SMART serkin_6 79 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02812 340 Pfam Protein kinase domain 151 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02812 340 MobiDBLite consensus disorder prediction 312 340 - -
Csa03g02812 340 Gene3D Transferase(Phosphotransferase) domain 1 153 329 - -
Csa03g02812 340 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 151 326 - -
Csa03g02812 340 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 15 153 - -
Csa03g02812 340 ProSiteProfiles Protein kinase domain profile. 79 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02812 340 Gene3D Phosphorylase Kinase; domain 1 67 152 - -
Csa03g02812 340 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Csa03g02812 340 SUPERFAMILY Protein kinase-like (PK-like) 76 320 IPR011009 -
Csa03g02812 340 MobiDBLite consensus disorder prediction 1 74 - -
Csa03g02812 340 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 151 326 - -
Csa03g02812 340 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 153 - -
Csa03g02812 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Csa03g02812 340 CDD PKc_MAPKK_plant_like 77 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00734 Csa-Chr1:4638650 Csa03g02812 Csa-Chr3:26953475 3.79E-100 dispersed
Csa01g02954 Csa-Chr1:25913871 Csa03g02812 Csa-Chr3:26953475 5.47E-56 dispersed
Csa03g02812 Csa-Chr3:26953475 Csa03g03971 Csa-Chr3:34710986 1.48E-31 dispersed
Csa03g02812 Csa-Chr3:26953475 Csa02g00036 Csa-Chr2:320884 8.56E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78015 PF00069 Pkinase 8.20E-38 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02812 K13413 - csv:101219669 608.986