Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02815 ATGCAGCTTCTCACCCGCCATTTCTTCTTACTGGTATGCTTCTCTTTCCATTTCGTTGTTGTTGTTTTTGGTTTAACTTCAGATGGGTTGGCCTTGTTATCACTCCAAAGCCGCTGGACTACTCATACCTCCTTTGTCCCTGTTTGGAATGCCTCTCATTCCACTCCCTGTTCTTGGGCTGGGATTGAATGTGATCAAAACCTCCGTGTCGTCACCTTCAATCTCTCTTTCTATGGGGTTTCGGGTCACCTTGGACCTGAAATTTCAAGTTTGACTCAGTTGCGTACTATTGATTTGACCACCAACGATTTCTCTGGTGAAATTCCTTATGGGATTGGTAACTGTAGCCATTTAGAGTACTTGGATCTCTCCTTCAACCAATTTAGTGGACAAATTCCTCAGTCATTGACCCTCCTTACGAACTTGACGTTTTTGAACTTCCATGAAAATGTTTTAACTGGTCCAATACCCGACTCCTTATTTCAGAATCTTAATTTCCAGTATGTGTATCTTAGTGAAAACAATCTCAACGGTTCTATCCCTTCAAATGTGGGGAATTCGAATCAGCTGTTGCATTTGTATCTGTATGGAAATGAGTTTTCTGGTTCCATACCTTCTTCCATAGGGAACTGTAGTCAATTGGAGGATCTTTATTTGGATGGGAACCAGTTGGTGGGAACATTGCCTCATAGTCTTAACAATCTTGATAATCTTGTTAATCTGGGTGTAAGCCGAAACAATCTCCAGGGTCCAATTCCTTTGGGTTCAGGAGTTTGTCAGAGTTTAGAATATATAGATTTGTCATTCAATGGTTATACAGGAGGTATACCTGCCGGGTTGGGCAACTGTAGTGCCCTAAAAACCTTACTTATTGTAAATTCCAGTTTAACAGGTCATATTCCTTCCTCCTTTGGCCGCCTAAGGAAGCTTTCACATATTGATCTCTCTAGAAATCAACTGTCTGGGAATATACCTCCTGAATTTGGGGCTTGCAAATCCTTGAAAGAATTGGATTTGTACGATAACCAACTCGAGGGACGTATCCCTAGTGAACTGGGCTTGCTAAGTAGATTAGAGGTCCTTCAATTGTTTTCAAACCGGTTGACTGGTGAAATTCCAATTAGCATCTGGAAGATTGCAAGTCTCCAACAGATTCTTGTGTATGACAACAACCTTTTTGGGGAATTACCCTTGATAATAACAGAACTCAGGCACCTCAAAATCATTTCTGTGTTCAACAATCATTTTTCTGGAGTCATACCTCAAAGTTTGGGACTCAACAGTAGCTTAGTGCAGGTGGAGTTCACCAATAATCAGTTCACTGGTCAAATTCCACCTAATTTATGCTCTGGAAAGACATTAAGGGTGCTAAATTTAGGTTTGAATCAATTTCAAGGAAATGTACCTCTTGATATTGGAACTTGTTTGACTCTTCAGAGATTAATTTTAAGAAGGAATAATCTAGCAGGGGTTCTGCCAGAATTTACGATAAATCACGGTCTTCGATTCATGGATGCCAGTGAAAATAACCTCAATGGAACAATTCCCTCAAGTTTGGGAAATTGCATCAATCTTACCTCAATTAATCTTCAAAGCAACAGGCTTTCAGGCCTTATACCTAATGGATTGAGAAATCTTGAGAATCTTCAAAGTTTGATTTTGTCTCATAACTTCTTGGAAGGACCTTTGCCATCTTCCCTCTCAAATTGCACGAAGCTGGATAAATTTGACGTAGGATTTAATTTATTGAATGGTTCTATACCTCGTAGTTTAGCCAGCTGGAAAGTTATATCCACGTTTATAATTAAAGAGAATCGATTTGCTGGAGGTATCCCGAATGTATTATCAGAACTTGAAAGCCTTTCACTACTAGATCTTGGTGGCAATCTGTTTGGAGGTGAAATCCCTTCATCTATTGGAAATTTGAAGAGTCTGTTTTACTCCCTGAATCTTAGTAACAATGGGTTAAGTGGCACACTACCTTCTGAGCTGGCGAATCTTGTCAAGTTACAGGAATTAGATATATCTCACAATAATTTGACTGGAAGTTTAACTGTCCTTGGCGAACTAAGTTCGACATTAGTTGAGCTTAACATTTCATATAATTTTTTCACCGGTCCAGTGCCACAAACATTAATGAAGTTATTGAATTCTGATCCCTCATCGTTCTTAGGTAACCCTGGGTTGTGCATTAGTTGTGATGTACCAGATGGTCTAAGTTGCAATAGAAATATCAGTATTAGTCCTTGTGCTGTTCATTCAAGCGCCCGTGGTAGCTCTCGACTTGGAAATGTACAGATTGCAATGATAGCTCTGGGGTCTTCACTTTTTGTTATTCTTTTGCTTCTTGGGTTGGTTTATAAGTTTGTTTATAACAGAAGAAACAAGCAAAACATTGAGACTGCTGCTCAAGTCGGAACAACTTCCTTGCTCAACAAGGTAATGGAGGCCACCGATAATTTAGATGAACGTTTCGTCATTGGAAGAGGAGCACATGGAGTTGTTTATAAGGTCTCCCTGGATTCAAATAAAGTTTTTGCTGTAAAGAAGCTTACATTTTTAGGACATAAAAGGGGAAGCCGGGATATGGTTAAAGAAATTAGAACTGTCAGCAACATCAAGCACCGGAACTTGATCTCTTTGGAAAGTTTTTGGTTGGGAAAAGATTATGGTCTATTGCTTTACAAATACTATCCAAATGGGAGCCTTTATGATGTGTTGCACGAGATGAATACAACTCCATCTCTCACATGGAAAGCCCGCTATAATATAGCGATCGGTATTGCTCATGCATTGGCATATCTCCATTACGATTGTGATCCTCCCATTATACACCGAGACATCAAACCACAGAATATACTTCTAGATTCGGAGATGGAACCTCATATCGCCGACTTTGGTCTTGCAAAGCTATTGGATCAAACTTTCGAACCCGCGACTTCATCTTCTTTTGCGGGTACAATTGGCTACATTGCACCAGAGAATGCATTTTCAGCAGCAAAGACCAAAGCCTCAGATGTGTACAGTTATGGGGTGGTTTTACTGGAGCTGGTGACGGGAAAGAAGCCATCAGATCCATCATTTATAGAAGTCGGGAATATGACGGCTTGGATTCGGTCGGTTTGGAAGGAGAAGAGAATGAAATAG 3147 40.13 MQLLTRHFFLLVCFSFHFVVVVFGLTSDGLALLSLQSRWTTHTSFVPVWNASHSTPCSWAGIECDQNLRVVTFNLSFYGVSGHLGPEISSLTQLRTIDLTTNDFSGEIPYGIGNCSHLEYLDLSFNQFSGQIPQSLTLLTNLTFLNFHENVLTGPIPDSLFQNLNFQYVYLSENNLNGSIPSNVGNSNQLLHLYLYGNEFSGSIPSSIGNCSQLEDLYLDGNQLVGTLPHSLNNLDNLVNLGVSRNNLQGPIPLGSGVCQSLEYIDLSFNGYTGGIPAGLGNCSALKTLLIVNSSLTGHIPSSFGRLRKLSHIDLSRNQLSGNIPPEFGACKSLKELDLYDNQLEGRIPSELGLLSRLEVLQLFSNRLTGEIPISIWKIASLQQILVYDNNLFGELPLIITELRHLKIISVFNNHFSGVIPQSLGLNSSLVQVEFTNNQFTGQIPPNLCSGKTLRVLNLGLNQFQGNVPLDIGTCLTLQRLILRRNNLAGVLPEFTINHGLRFMDASENNLNGTIPSSLGNCINLTSINLQSNRLSGLIPNGLRNLENLQSLILSHNFLEGPLPSSLSNCTKLDKFDVGFNLLNGSIPRSLASWKVISTFIIKENRFAGGIPNVLSELESLSLLDLGGNLFGGEIPSSIGNLKSLFYSLNLSNNGLSGTLPSELANLVKLQELDISHNNLTGSLTVLGELSSTLVELNISYNFFTGPVPQTLMKLLNSDPSSFLGNPGLCISCDVPDGLSCNRNISISPCAVHSSARGSSRLGNVQIAMIALGSSLFVILLLLGLVYKFVYNRRNKQNIETAAQVGTTSLLNKVMEATDNLDERFVIGRGAHGVVYKVSLDSNKVFAVKKLTFLGHKRGSRDMVKEIRTVSNIKHRNLISLESFWLGKDYGLLLYKYYPNGSLYDVLHEMNTTPSLTWKARYNIAIGIAHALAYLHYDCDPPIIHRDIKPQNILLDSEMEPHIADFGLAKLLDQTFEPATSSSFAGTIGYIAPENAFSAAKTKASDVYSYGVVLLELVTGKKPSDPSFIEVGNMTAWIRSVWKEKRMK* 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26976819 26980540 + CsaV3_3G031210.1 Csa03g02815 523720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02815 1048 ProSiteProfiles Leucine-rich repeat profile. 333 355 IPR001611 GO:0005515
Csa03g02815 1048 PANTHER OS08G0446200 PROTEIN 10 254 - -
Csa03g02815 1048 Gene3D Phosphorylase Kinase; domain 1 786 897 - -
Csa03g02815 1048 SUPERFAMILY L domain-like 52 421 - -
Csa03g02815 1048 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 690 1045 - -
Csa03g02815 1048 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 287 643 - -
Csa03g02815 1048 SMART LRR_typ_2 546 570 IPR003591 -
Csa03g02815 1048 SMART LRR_typ_2 307 331 IPR003591 -
Csa03g02815 1048 SMART LRR_typ_2 139 163 IPR003591 -
Csa03g02815 1048 SMART LRR_typ_2 618 642 IPR003591 -
Csa03g02815 1048 SMART LRR_typ_2 355 379 IPR003591 -
Csa03g02815 1048 SMART LRR_typ_2 667 690 IPR003591 -
Csa03g02815 1048 SMART LRR_typ_2 522 545 IPR003591 -
Csa03g02815 1048 SMART LRR_typ_2 91 115 IPR003591 -
Csa03g02815 1048 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Csa03g02815 1048 SMART serkin_6 821 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02815 1048 SUPERFAMILY L domain-like 388 751 - -
Csa03g02815 1048 PANTHER OS08G0446200 PROTEIN 287 643 - -
Csa03g02815 1048 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 259 312 - -
Csa03g02815 1048 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Csa03g02815 1048 Gene3D Transferase(Phosphotransferase) domain 1 898 1048 - -
Csa03g02815 1048 ProSiteProfiles Protein kinase domain profile. 821 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02815 1048 Gene3D Ribonuclease Inhibitor 498 744 IPR032675 -
Csa03g02815 1048 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 10 254 - -
Csa03g02815 1048 ProSitePatterns Serine/Threonine protein kinases active-site signature. 943 955 IPR008271 GO:0004672|GO:0006468
Csa03g02815 1048 ProSiteProfiles Leucine-rich repeat profile. 669 691 IPR001611 GO:0005515
Csa03g02815 1048 SUPERFAMILY Protein kinase-like (PK-like) 804 1027 IPR011009 -
Csa03g02815 1048 ProSitePatterns Protein kinases ATP-binding region signature. 827 850 IPR017441 GO:0005524
Csa03g02815 1048 Pfam Leucine Rich Repeat 524 546 IPR001611 GO:0005515
Csa03g02815 1048 Pfam Leucine Rich Repeat 548 570 IPR001611 GO:0005515
Csa03g02815 1048 PANTHER OS08G0446200 PROTEIN 635 685 - -
Csa03g02815 1048 PANTHER OS08G0446200 PROTEIN 690 1045 - -
Csa03g02815 1048 Pfam Leucine rich repeat 285 344 IPR001611 GO:0005515
Csa03g02815 1048 PRINTS Leucine-rich repeat signature 310 323 - -
Csa03g02815 1048 PRINTS Leucine-rich repeat signature 667 680 - -
Csa03g02815 1048 Gene3D Ribonuclease Inhibitor 185 352 IPR032675 -
Csa03g02815 1048 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 635 685 - -
Csa03g02815 1048 Gene3D Ribonuclease Inhibitor 353 497 IPR032675 -
Csa03g02815 1048 PANTHER OS08G0446200 PROTEIN 259 312 - -
Csa03g02815 1048 Pfam Protein kinase domain 826 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02815 Csa-Chr3:26976819 Csa02g00996 Csa-Chr2:9583496 5.14E-180 dispersed
Csa03g02814 Csa-Chr3:26966902 Csa03g02815 Csa-Chr3:26976819 1.72E-06 tandem
Csa03g02815 Csa-Chr3:26976819 Csa03g02816 Csa-Chr3:26982218 1.48E-26 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78016 PF00069 Pkinase 2.80E-42 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02815 - - csv:101204561 1980.3