Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02829 ATGAGTAATTGGTTGGGTTTTTCTCTTACTCCTCATCTCAGAATCCATGATTCCACCACCGCCACCGCCACCCCCACCCCCACCCCCACCGCCGATGAACAACCCAACACCGCCGCCTTCCCCCATCTCATGCCTCTCCGCTCCGATGGAACTCTTTGTATCTCCGCTCCCCACGATTGGAGATCGTATGAGAATGAAGAGGAAAGTCCAAAACTTGAGGACTTTTTGGGGAATTGCTATTCAAACTCACTGGGAAATGATCAAAGCCATAGTAACAACGCCGCCGGCTTTATTCAACCCAATAATAATAGTAATAATAATGAGGATGATGATAATTACAATTACCAAGCCGATCAATCTCTAACTCCTAACAATACTAATGCAATTGACAAGTCTTGGTTGGGACCCACTTCACAAAATGGGTGTGGCTCCTTCCAATCTCTTTCTTTGGGCATGAGCCCAGCCAACTCTCAAAGCGACATAGCTTCATTCACTTCACCCCCATCCCCATCGCCGCCGCATATGGCTGCTGATTCCCGGAAAAGGCCTATGGCGGTAGCCAAGGCTTTTATCAAAGAACCTGTACCAAGAAAGTCCATTGATACTTTCGGACAAAGAACCTCCCAGTATCGCGGTGTCACAAGGCATAGATGGACAGGAAGATATGAGGCACATTTATGGGATAACAGCTGTAGAAAAGAGGGACAAACAAGGAAGGGAAGGCAAGTTTATCTTGGGGGTTATGATAAAGAAGAAAAAGCGGCACGAGCTTACGATCTAGCTGCACTAAAATATTGGGGATCAACAACGCATATAAATTTTCCACTGAGCACTTATGAAAGTGAGCTGGATGAAATGAAGAACATGACCAGGCAAGAGTTTGTAGCCAATTTGAGAAGGAAAAGCAGTGGATTCTCAAGAGGAGCCTCAATGTACAGAGGAGTTACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATAGGAAGAGTAGCAGGAAATAAAGATTTGTACCTTGGGACATTTAGTACACAAGAGGAGGCTGCGGAGGCCTACGACATTGCGGCAATCAAGTTTAGGGGGACGAGTGCTGTGACAAATTTCGACATTAGTAGGTATGACGTAAAGAGGATTTGCTCTAGTTCGACTTTGATTGCTGGTGACCTTGCGAAACGTTCACCATTAAAGGACGGTACTCCCTCGACAACTGAAGACTATACCACTTGTGCTTCTCCATCATCGTCCTCACAGCCTCTCTTAGCCATTACGGATGGCAGTGCCGAGAGTCACCACGAGTTGGCTAACATGGTTTGGTGTGACAACGCTGTCGCAGATGATGTTAATCAACACCATGAGAATGTAGCAAAGATGGACAACGATTTGAGTTTGATGGGTTCAAGCAATAGAACGATAGATCCATCAACAAAGTGCTCTCCAGTGCAAAACAACGAGGAGTTTGGGATTGGGGTTGGGGGAGGAGAGTATTCGCAAGGATATTTTTCAATGCAAGAAGAAAAGTATGAAGAGGGGGATCAAAATAGGCAAATGAGTGTAACATTGGGTCATCATCATGCTCCAATGTTTGCTCTATGGAATCAATGA 1602 45.51 MSNWLGFSLTPHLRIHDSTTATATPTPTPTADEQPNTAAFPHLMPLRSDGTLCISAPHDWRSYENEEESPKLEDFLGNCYSNSLGNDQSHSNNAAGFIQPNNNSNNNEDDDNYNYQADQSLTPNNTNAIDKSWLGPTSQNGCGSFQSLSLGMSPANSQSDIASFTSPPSPSPPHMAADSRKRPMAVAKAFIKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGSTTHINFPLSTYESELDEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPLKDGTPSTTEDYTTCASPSSSSQPLLAITDGSAESHHELANMVWCDNAVADDVNQHHENVAKMDNDLSLMGSSNRTIDPSTKCSPVQNNEEFGIGVGGGEYSQGYFSMQEEKYEEGDQNRQMSVTLGHHHAPMFALWNQ* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27057687 27061567 - CsaV3_3G031350.1 Csa03g02829 523734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02829 533 MobiDBLite consensus disorder prediction 152 180 - -
Csa03g02829 533 MobiDBLite consensus disorder prediction 19 44 - -
Csa03g02829 533 PRINTS Ethylene responsive element binding protein signature 210 221 IPR001471 GO:0003700|GO:0006355
Csa03g02829 533 PRINTS Ethylene responsive element binding protein signature 351 371 IPR001471 GO:0003700|GO:0006355
Csa03g02829 533 MobiDBLite consensus disorder prediction 19 35 - -
Csa03g02829 533 MobiDBLite consensus disorder prediction 90 135 - -
Csa03g02829 533 SUPERFAMILY DNA-binding domain 208 277 IPR016177 GO:0003677
Csa03g02829 533 CDD AP2 310 371 IPR001471 GO:0003700|GO:0006355
Csa03g02829 533 SMART rav1_2 311 375 IPR001471 GO:0003700|GO:0006355
Csa03g02829 533 SMART rav1_2 209 281 IPR001471 GO:0003700|GO:0006355
Csa03g02829 533 SUPERFAMILY DNA-binding domain 310 371 IPR016177 GO:0003677
Csa03g02829 533 ProSiteProfiles AP2/ERF domain profile. 311 369 IPR001471 GO:0003700|GO:0006355
Csa03g02829 533 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 62 495 - -
Csa03g02829 533 MobiDBLite consensus disorder prediction 392 420 - -
Csa03g02829 533 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 62 495 - -
Csa03g02829 533 Gene3D AP2/ERF domain 311 371 IPR036955 GO:0003700|GO:0006355
Csa03g02829 533 Gene3D AP2/ERF domain 208 277 IPR036955 GO:0003700|GO:0006355
Csa03g02829 533 MobiDBLite consensus disorder prediction 396 420 - -
Csa03g02829 533 CDD AP2 208 277 IPR001471 GO:0003700|GO:0006355
Csa03g02829 533 ProSiteProfiles AP2/ERF domain profile. 209 275 IPR001471 GO:0003700|GO:0006355
Csa03g02829 533 Pfam AP2 domain 312 361 IPR001471 GO:0003700|GO:0006355
Csa03g02829 533 Pfam AP2 domain 209 267 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g02829 Csa07g02084 CCT
Csa03g02829 Csa07g02084 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01870 Csa-Chr2:17788116 Csa03g02829 Csa-Chr3:27057687 1.84E-133 dispersed
Csa03g02829 Csa-Chr3:27057687 Csa06g03048 Csa-Chr6:26200005 2.44E-135 dispersed
Csa03g02829 Csa-Chr3:27057687 Csa04g02504 Csa-Chr4:24869562 1.18E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31298 PF00847 AP2 7.40E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02829 K09285 - csv:101205762 1055.05