Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g02829 | ATGAGTAATTGGTTGGGTTTTTCTCTTACTCCTCATCTCAGAATCCATGATTCCACCACCGCCACCGCCACCCCCACCCCCACCCCCACCGCCGATGAACAACCCAACACCGCCGCCTTCCCCCATCTCATGCCTCTCCGCTCCGATGGAACTCTTTGTATCTCCGCTCCCCACGATTGGAGATCGTATGAGAATGAAGAGGAAAGTCCAAAACTTGAGGACTTTTTGGGGAATTGCTATTCAAACTCACTGGGAAATGATCAAAGCCATAGTAACAACGCCGCCGGCTTTATTCAACCCAATAATAATAGTAATAATAATGAGGATGATGATAATTACAATTACCAAGCCGATCAATCTCTAACTCCTAACAATACTAATGCAATTGACAAGTCTTGGTTGGGACCCACTTCACAAAATGGGTGTGGCTCCTTCCAATCTCTTTCTTTGGGCATGAGCCCAGCCAACTCTCAAAGCGACATAGCTTCATTCACTTCACCCCCATCCCCATCGCCGCCGCATATGGCTGCTGATTCCCGGAAAAGGCCTATGGCGGTAGCCAAGGCTTTTATCAAAGAACCTGTACCAAGAAAGTCCATTGATACTTTCGGACAAAGAACCTCCCAGTATCGCGGTGTCACAAGGCATAGATGGACAGGAAGATATGAGGCACATTTATGGGATAACAGCTGTAGAAAAGAGGGACAAACAAGGAAGGGAAGGCAAGTTTATCTTGGGGGTTATGATAAAGAAGAAAAAGCGGCACGAGCTTACGATCTAGCTGCACTAAAATATTGGGGATCAACAACGCATATAAATTTTCCACTGAGCACTTATGAAAGTGAGCTGGATGAAATGAAGAACATGACCAGGCAAGAGTTTGTAGCCAATTTGAGAAGGAAAAGCAGTGGATTCTCAAGAGGAGCCTCAATGTACAGAGGAGTTACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATAGGAAGAGTAGCAGGAAATAAAGATTTGTACCTTGGGACATTTAGTACACAAGAGGAGGCTGCGGAGGCCTACGACATTGCGGCAATCAAGTTTAGGGGGACGAGTGCTGTGACAAATTTCGACATTAGTAGGTATGACGTAAAGAGGATTTGCTCTAGTTCGACTTTGATTGCTGGTGACCTTGCGAAACGTTCACCATTAAAGGACGGTACTCCCTCGACAACTGAAGACTATACCACTTGTGCTTCTCCATCATCGTCCTCACAGCCTCTCTTAGCCATTACGGATGGCAGTGCCGAGAGTCACCACGAGTTGGCTAACATGGTTTGGTGTGACAACGCTGTCGCAGATGATGTTAATCAACACCATGAGAATGTAGCAAAGATGGACAACGATTTGAGTTTGATGGGTTCAAGCAATAGAACGATAGATCCATCAACAAAGTGCTCTCCAGTGCAAAACAACGAGGAGTTTGGGATTGGGGTTGGGGGAGGAGAGTATTCGCAAGGATATTTTTCAATGCAAGAAGAAAAGTATGAAGAGGGGGATCAAAATAGGCAAATGAGTGTAACATTGGGTCATCATCATGCTCCAATGTTTGCTCTATGGAATCAATGA | 1602 | 45.51 | MSNWLGFSLTPHLRIHDSTTATATPTPTPTADEQPNTAAFPHLMPLRSDGTLCISAPHDWRSYENEEESPKLEDFLGNCYSNSLGNDQSHSNNAAGFIQPNNNSNNNEDDDNYNYQADQSLTPNNTNAIDKSWLGPTSQNGCGSFQSLSLGMSPANSQSDIASFTSPPSPSPPHMAADSRKRPMAVAKAFIKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGSTTHINFPLSTYESELDEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPLKDGTPSTTEDYTTCASPSSSSQPLLAITDGSAESHHELANMVWCDNAVADDVNQHHENVAKMDNDLSLMGSSNRTIDPSTKCSPVQNNEEFGIGVGGGEYSQGYFSMQEEKYEEGDQNRQMSVTLGHHHAPMFALWNQ* | 534 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 27057687 | 27061567 | - | CsaV3_3G031350.1 | Csa03g02829 | 523734 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g02829 | 533 | MobiDBLite | consensus disorder prediction | 152 | 180 | - | - | |
Csa03g02829 | 533 | MobiDBLite | consensus disorder prediction | 19 | 44 | - | - | |
Csa03g02829 | 533 | PRINTS | Ethylene responsive element binding protein signature | 210 | 221 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g02829 | 533 | PRINTS | Ethylene responsive element binding protein signature | 351 | 371 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g02829 | 533 | MobiDBLite | consensus disorder prediction | 19 | 35 | - | - | |
Csa03g02829 | 533 | MobiDBLite | consensus disorder prediction | 90 | 135 | - | - | |
Csa03g02829 | 533 | SUPERFAMILY | DNA-binding domain | 208 | 277 | IPR016177 | GO:0003677 | |
Csa03g02829 | 533 | CDD | AP2 | 310 | 371 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g02829 | 533 | SMART | rav1_2 | 311 | 375 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g02829 | 533 | SMART | rav1_2 | 209 | 281 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g02829 | 533 | SUPERFAMILY | DNA-binding domain | 310 | 371 | IPR016177 | GO:0003677 | |
Csa03g02829 | 533 | ProSiteProfiles | AP2/ERF domain profile. | 311 | 369 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g02829 | 533 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 62 | 495 | - | - | |
Csa03g02829 | 533 | MobiDBLite | consensus disorder prediction | 392 | 420 | - | - | |
Csa03g02829 | 533 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM | 62 | 495 | - | - | |
Csa03g02829 | 533 | Gene3D | AP2/ERF domain | 311 | 371 | IPR036955 | GO:0003700|GO:0006355 | |
Csa03g02829 | 533 | Gene3D | AP2/ERF domain | 208 | 277 | IPR036955 | GO:0003700|GO:0006355 | |
Csa03g02829 | 533 | MobiDBLite | consensus disorder prediction | 396 | 420 | - | - | |
Csa03g02829 | 533 | CDD | AP2 | 208 | 277 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g02829 | 533 | ProSiteProfiles | AP2/ERF domain profile. | 209 | 275 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g02829 | 533 | Pfam | AP2 domain | 312 | 361 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g02829 | 533 | Pfam | AP2 domain | 209 | 267 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa03g02829 | Csa07g02084 | CCT | |
Csa03g02829 | Csa07g02084 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01870 | Csa-Chr2:17788116 | Csa03g02829 | Csa-Chr3:27057687 | 1.84E-133 | dispersed | |
Csa03g02829 | Csa-Chr3:27057687 | Csa06g03048 | Csa-Chr6:26200005 | 2.44E-135 | dispersed | |
Csa03g02829 | Csa-Chr3:27057687 | Csa04g02504 | Csa-Chr4:24869562 | 1.18E-139 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31298 | PF00847 | AP2 | 7.40E-13 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g02829 | K09285 | - | csv:101205762 | 1055.05 |