Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02840 ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCACCGAATCGGCGTCGGACGATTAGCGCGCCTGAAGACAAATTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGACTTTCGATCAGATGGGCATTAAAGATGACCTTCTTCGTGGAATATATGCCTACGGTTTTGAAAAGCCATCTGCCATTCAGCAGAGAGCTGTGAGGCCGATTATTGAGGGTCGAGATGTTATTGCGCAGGCTCAATCTGGGACTGGGAAGACTTCCATGATTGCCCTTACCGTTTGCCAGATGGTTGATACCACAAGTAGAGAGGTGCAAGCCTTGATCTTGTCCCCTACGAGAGAATTGGCTACTCAGACAGAGAAGGTTATATTGGCCATTGGCGACTACATTAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCGGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTAGTTTTGGACGAGTCTGATGAAATGCTGAGCAGGGGGTTTAAAGACCAAATTTATGATGTATATCGTTATCTTCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACAAACAAGTTTATGACAGATCCTGTGAGGATTCTTGTCAAGCGTGATGAGTTGACTTTGGAGGGTATTAAGCAATTCTTTGTTGCGGTTGAAAGGGAAGAGTGGAAGTTTGATACCTTATGTGATCTTTATGATACCTTGACTATCACTCAAGCTGTCATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAAAAGATGCGAAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTCCGATCAGGAACTACCCGTGTTCTAATTACTACTGATGTTTGGGCACGAGGGCTTGATGTGCAGCAGGTATCACTTGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGCGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACCCAGATTGACGAGATGCCCATGAATGTTGCTGATTTGATTTAA 1233 44.61 MAAAATTSVVPPNRRRTISAPEDKLEFETTEGVEPILTFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTTSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27153934 27158434 + CsaV3_3G031460.1 Csa03g02840 523745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02840 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724
Csa03g02840 410 SMART ultradead3 56 253 IPR014001 -
Csa03g02840 410 CDD SF2_C_DEAD 250 380 - -
Csa03g02840 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Csa03g02840 410 SMART helicmild6 290 371 IPR001650 -
Csa03g02840 410 Gene3D - 22 241 IPR027417 -
Csa03g02840 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Csa03g02840 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 403 - -
Csa03g02840 410 Gene3D - 242 410 IPR027417 -
Csa03g02840 410 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676|GO:0005524
Csa03g02840 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Csa03g02840 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Csa03g02840 410 PANTHER BNAC03G41130D PROTEIN 22 403 - -
Csa03g02840 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00903 Csa-Chr3:7486811 Csa03g02840 Csa-Chr3:27153934 5.64E-93 dispersed
Csa03g02840 Csa-Chr3:27153934 Csa03g04064 Csa-Chr3:35570090 3.68E-179 dispersed
Csa06g02935 Csa-Chr6:25427974 Csa03g02840 Csa-Chr3:27153934 1.14E-12 dispersed
Csa03g02840 Csa-Chr3:27153934 Csa07g02378 Csa-Chr7:21924633 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02840 K13025 - csv:101222664 808.135