Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g02840 | ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCACCGAATCGGCGTCGGACGATTAGCGCGCCTGAAGACAAATTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGACTTTCGATCAGATGGGCATTAAAGATGACCTTCTTCGTGGAATATATGCCTACGGTTTTGAAAAGCCATCTGCCATTCAGCAGAGAGCTGTGAGGCCGATTATTGAGGGTCGAGATGTTATTGCGCAGGCTCAATCTGGGACTGGGAAGACTTCCATGATTGCCCTTACCGTTTGCCAGATGGTTGATACCACAAGTAGAGAGGTGCAAGCCTTGATCTTGTCCCCTACGAGAGAATTGGCTACTCAGACAGAGAAGGTTATATTGGCCATTGGCGACTACATTAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCGGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTAGTTTTGGACGAGTCTGATGAAATGCTGAGCAGGGGGTTTAAAGACCAAATTTATGATGTATATCGTTATCTTCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACAAACAAGTTTATGACAGATCCTGTGAGGATTCTTGTCAAGCGTGATGAGTTGACTTTGGAGGGTATTAAGCAATTCTTTGTTGCGGTTGAAAGGGAAGAGTGGAAGTTTGATACCTTATGTGATCTTTATGATACCTTGACTATCACTCAAGCTGTCATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAAAAGATGCGAAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTCCGATCAGGAACTACCCGTGTTCTAATTACTACTGATGTTTGGGCACGAGGGCTTGATGTGCAGCAGGTATCACTTGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGCGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACCCAGATTGACGAGATGCCCATGAATGTTGCTGATTTGATTTAA | 1233 | 44.61 | MAAAATTSVVPPNRRRTISAPEDKLEFETTEGVEPILTFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTTSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI* | 411 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 27153934 | 27158434 | + | CsaV3_3G031460.1 | Csa03g02840 | 523745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g02840 | 410 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 37 | 65 | IPR014014 | GO:0003724 | |
Csa03g02840 | 410 | SMART | ultradead3 | 56 | 253 | IPR014001 | - | |
Csa03g02840 | 410 | CDD | SF2_C_DEAD | 250 | 380 | - | - | |
Csa03g02840 | 410 | CDD | DEADc_EIF4AIII_DDX48 | 39 | 239 | - | - | |
Csa03g02840 | 410 | SMART | helicmild6 | 290 | 371 | IPR001650 | - | |
Csa03g02840 | 410 | Gene3D | - | 22 | 241 | IPR027417 | - | |
Csa03g02840 | 410 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 105 | 393 | IPR027417 | - | |
Csa03g02840 | 410 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 22 | 403 | - | - | |
Csa03g02840 | 410 | Gene3D | - | 242 | 410 | IPR027417 | - | |
Csa03g02840 | 410 | Pfam | DEAD/DEAH box helicase | 62 | 224 | IPR011545 | GO:0003676|GO:0005524 | |
Csa03g02840 | 410 | Pfam | Helicase conserved C-terminal domain | 263 | 371 | IPR001650 | - | |
Csa03g02840 | 410 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 249 | 410 | IPR001650 | - | |
Csa03g02840 | 410 | PANTHER | BNAC03G41130D PROTEIN | 22 | 403 | - | - | |
Csa03g02840 | 410 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 68 | 238 | IPR014001 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00903 | Csa-Chr3:7486811 | Csa03g02840 | Csa-Chr3:27153934 | 5.64E-93 | dispersed | |
Csa03g02840 | Csa-Chr3:27153934 | Csa03g04064 | Csa-Chr3:35570090 | 3.68E-179 | dispersed | |
Csa06g02935 | Csa-Chr6:25427974 | Csa03g02840 | Csa-Chr3:27153934 | 1.14E-12 | dispersed | |
Csa03g02840 | Csa-Chr3:27153934 | Csa07g02378 | Csa-Chr7:21924633 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g02840 | K13025 | - | csv:101222664 | 808.135 |