Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02841 ATGTCTCGCCAAGTTCCGACCACTGCGTTCCACAAGTCCAAGACGCTTGATAACAAATATATGCTGGGAGATGAGATCGGAAAAGGAGCGTATGGGCGAGTCTACAAGGGTCTGGATTTGGAGAATGGGGACTTTGTTGCTATTAAACAAGTTTCCTTGGAGAATATTGCTCAAGAGGACCTCAACATTATCATGCAAGAGATTGACTTACTGAAGAACTTGAACCACAAAAACATTGTGAAGTATCTTGGATCTTTGAAAACAAAGACTCACCTTCACATAATACTCGAGTATGTGGAGAATGGATCACTTGCCAACATCATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCGTTGGTTGCTGTTTATATTTCTCAGGTTTTGGAAGGCTTGGTTTATCTACATGAGCAGGGTGTAATTCATCGGGACATTAAGGGTGCGAACATACTGACAACCAAGGAGGGCCTTGTGAAACTTGCTGATTTTGGTGTTGCAACAAAATTAACAGAGGCCGATGTTAATACTCATTCGGTTGTTGGAACACCTTACTGGATGGCACCTGAGGTAATTGAAATGTCAGGAGTTTGTGCTGCTTCCGACATATGGAGTGTCGGATGTACAGTGATTGAACTGCTTACATGCGTACCTCCATATTATGATCTACAACCTATGCCTGCTCTCTTTCGCATTGTACAAGACAAACATCCTCCAATTCCAGATAGCCTATCACCAGATATCACTGATTTTTTACGCCAGTGCTTTAAGAAGGATGCTAGGCAAAGGCCTGATGCAAAAACTTTGCTTTCTCATCCTTGGATACAGAACTGTCGGCGGGCTTTGCATTCTTCTCTTCGTCATAGTGGCACATTGAGAAACAGCCAACAAGATGGATCAATTGAAGCAGAAATTTCTAATGGAGACAATCAAAACTCTTGCGAAAGCCCTTCGGCAGAGAAAAATGAAGTCGCTGATTCTGATTTTAAAGCTGATTCAAGGAAGGAGTTGTCATCAGATGTCGCCACTGATGCGAGCAAGTCCCAAAAGCATTTTGCTTCAGGCCCTAATTTTGTTGAGGAAGGAGAAAGCCTAGAAGAAGATACTCTATTGGATCAAGTTCCTACCTTATCCATTCATGAAAATTCATCTCTTTTAACCAGTTCTGGCAGACTTGCTACCTCTGGACCGACTGAGTTTCATGAATCTCATGGTAGAGCCCATGATGAAGTAATAATGAATGGCGAAGTTCCATTGACAGAATTAAGGAAAGATGCTTCTAGAAAACAGGGAGAGCAAGAAACTTCTACAACATCTGGGAGGAGATCATTTGGTTTTGAACCTGAAAGTCAGGATAATAGTTTTCAAAAGGTGTCAAAGATGTCGGTTGCTTTGGGAGGAGATGAGCTCAGTAAATTTAGTGACACTCCTGGAGATGCTTCCTTAGATGATTTATTCCAACCTCTAGATAAGCACTCTGGGGATCAAGCTACTGGAGCATCAACATCTCTATCTATTCTACAATCAAACATGGGTAATGTGCCAGTAAACGATGTTGGGAAAAATGACCTGGCCACGAAGTTGAGGGCTACAATTGCTCAAAAACAAATGGAGAATGAAATGGGACAGGCAAGTGGTGGGGGTGACCTGATTCGACTAGTGATGGGCGTTTTGAAGGATGATGATATTGATATTGACGGTTTGGTTTTTGATGAGAAGTTGCCCGGAGAAACACTTTTTCCTTTGCAGGCTGTTGAATTCGGCAGATTAGTTGGATCGTTGAGACCTGATGAACCCGAAGATGTAATTGTATCTGCCTGTCAAAAACTGATAGCTATCTTTCATCAAAGACCTGAGCAGAAAATTGTATATGTTACACAGCATGGCCTACTCCCATTAACTGAGTTGCTTGAAGTTCCTAAAACTCGTATTATATGTTCGGTGCTCCAGCTTATAAATCAGATAGTTAAGGATAATGTTGACTTCCAAGAAAATGCATGTCTTGTCGGTATGATTCCTCTGGTAATGGGCTTTGCAGTTCCGGATCGTCCACGAGAAGTTCGTATGGAAGCAGCTTATTTCTTTCAACAGCTTTGTCAATCAAGCTCTTTGACATTGCAAATGTTCGTTGCATGCCGTGGAATACCTGTATTAGTAAGCTTTTTAGAGGCTGATTATGCAAAGTACAGGGACATGGTTCACCTAGCTATTGATGGAATGTGGCAGATCTTTAAGCTCCAGCGTTCCACTCTTAGAAATGGTTTCTGTCGTATAGCAGCAAAAAGTGGAATTCTGCTTAGGCTTATTAACACCCTCTACAGCTTGAACGAGGCAACTCGCTTAGCTTCCATAACAGTTGGGGCAGGATATCCAGTTGATGGTTTAACTCCACGGCCACGATCTGGTCAACTAGATCCTAGCCACCCTATATTCAGTCAGTATGAGGCCTCATTCCCTATGCCTGATCAACCTGATCTTTTGAAGGTCAGGCATGGTATAGTTGATCATCACTCGTCTACTGGACCACCAGAACCTTCTAGGGCTTCAACTTCACATTCTCAAAGATCAGATACCAATCAATCTGATTATCGACACTTTCCCATGGATACTGATAGGCCTCAATCTAGCAATGCCACAAATGAAGCCCTGGGATCTAAACCGTCAGAGCTTGCATCTTTGGACAAAGTTTTACATTTAGCAAGCAAGGAACCTTCTGGCTCGGCTTCCAAAGAACATGAAAATGCAGATAGATGGAGAACTGAGAGAATGGCCAACTCTAATAGGACTTCCACAGATAGGCCTCCGAAATTTGTGGAACCTGCATCTAATGGATTTTCTACAACATCGGCGGCCACTCAGCAAGAGCAAGTTCGACCCCTTCTAAGTCTGTTGGACAAAGAGCCCCCGTCTCGACATTTTTCTGGTCAGCTCGAGTACATGCGCCAACTTTCTGGATTGGAGAGACATGAAACTATAATGCCTCTATTACATGCATCAAATGAAAAGAAGATAAATGGGGAACCTGATTTCTTAATGGCAGAATTCGCAGAGGTCTCCCAACGTGGAAAAGACAATGCAAACCTTGACCCTGCATCTAAGGTTTCTCTTAAAACGGCAGCAAAGAAGGTAGGACCCCTGATTTCCAATGAAGGTGCTGCATCCACATCTGGAATTGCTTCACAGACAGCTTCTGGAGTACTTTCAGGTTCGGGTGTATTAAATGCTAGACCCGGGAGTGCAACATCCTCTGGACTTCTTTCACACATGGTGTCAACTCTGAACGCTGATGTTGCAAGGGAATACTTGGCGAAGGTGGCTGATCTATTGCTTGAGTTTGCTCAGGCAGATACAACTGTGAAGTCATATATGTGCAGCCAAAGCTTACTTAATCGCCTTTTCCAAATGTTCAATAGGGTAGAGCCTTCAATTCTCTTGAAGATATTGAAGTGTATAAATCATCTCTCAACAGATCCAAATTGCTTAGAAAATCTTCAGCGAGCGGATGCAATTAAATATTTGATTCCGAACCTTGAACTCAAAGAAGGGTCACTGGTGTCACAAATACATACTGAGGTCCTCAGTGCACTATTCAATTTGTGCAAGATAAATAAGAGAAGACAAGAATATGCAGCTGAAAATGGAATTATTCCACACTTAATGCATTTTATTATATCAGACTCTCCTCTGAAACAATATGCATTGCCTCTGCTGTGTGATATGGCCCATGCATCTCGTAATTCCAGGGAGCAGTTAAGAGCCCACGGCGGATTAGATGTGTATTTGAGCCTACTTGAAGATGACCTTTGGTCTGTCACAGCATTGGATTCTATTGCTGTTTGCTTGGCTCATGATAATGACAACCGAAAAGTTGAGCAAGCTTTGCTAAAAAAGGATGCAGTTCAGAAATTGGTTAAGTTTTTCCAGTGCTGTCCAGAACAACATTTTGTCCATATTTTGGAGCCGTTCTTGAAAATCATCACGAAATCTTCCCGAATCAATACGACATTGGCTGTCAACGGATTGACCCCATTGCTTATAGCAAGACTAGACCACCAAGATGCAATTGCTCGGCTTAATCTACTTAAACTGATAAAGGCGGTGTATGAGCATCATCCACGACCCAAGCAGTTGATTGTCGAGAATGATTTACCTCATAAACTTCAAAATTTGATTGAGGAACGTAGGGATGGACAAAGATCTGGAGGGCAAGTATTGGTGAAACAAATGGCAACATCTCTCCTTAAAGCTCTTCATATAAATACGGTTTTGTAA 4269 42.26 MSRQVPTTAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYISQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWIQNCRRALHSSLRHSGTLRNSQQDGSIEAEISNGDNQNSCESPSAEKNEVADSDFKADSRKELSSDVATDASKSQKHFASGPNFVEEGESLEEDTLLDQVPTLSIHENSSLLTSSGRLATSGPTEFHESHGRAHDEVIMNGEVPLTELRKDASRKQGEQETSTTSGRRSFGFEPESQDNSFQKVSKMSVALGGDELSKFSDTPGDASLDDLFQPLDKHSGDQATGASTSLSILQSNMGNVPVNDVGKNDLATKLRATIAQKQMENEMGQASGGGDLIRLVMGVLKDDDIDIDGLVFDEKLPGETLFPLQAVEFGRLVGSLRPDEPEDVIVSACQKLIAIFHQRPEQKIVYVTQHGLLPLTELLEVPKTRIICSVLQLINQIVKDNVDFQENACLVGMIPLVMGFAVPDRPREVRMEAAYFFQQLCQSSSLTLQMFVACRGIPVLVSFLEADYAKYRDMVHLAIDGMWQIFKLQRSTLRNGFCRIAAKSGILLRLINTLYSLNEATRLASITVGAGYPVDGLTPRPRSGQLDPSHPIFSQYEASFPMPDQPDLLKVRHGIVDHHSSTGPPEPSRASTSHSQRSDTNQSDYRHFPMDTDRPQSSNATNEALGSKPSELASLDKVLHLASKEPSGSASKEHENADRWRTERMANSNRTSTDRPPKFVEPASNGFSTTSAATQQEQVRPLLSLLDKEPPSRHFSGQLEYMRQLSGLERHETIMPLLHASNEKKINGEPDFLMAEFAEVSQRGKDNANLDPASKVSLKTAAKKVGPLISNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSTLNADVAREYLAKVADLLLEFAQADTTVKSYMCSQSLLNRLFQMFNRVEPSILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHTEVLSALFNLCKINKRRQEYAAENGIIPHLMHFIISDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLEDDLWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPHKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL* 1423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27159542 27197724 - CsaV3_3G031470.1 Csa03g02841 523746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02841 1422 MobiDBLite consensus disorder prediction 795 814 - -
Csa03g02841 1422 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02841 1422 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Csa03g02841 1422 MobiDBLite consensus disorder prediction 320 340 - -
Csa03g02841 1422 Gene3D - 582 785 IPR011989 -
Csa03g02841 1422 PANTHER MAP KINASE KINASE KINASE 2 1378 - -
Csa03g02841 1422 SUPERFAMILY Protein kinase-like (PK-like) 17 275 IPR011009 -
Csa03g02841 1422 MobiDBLite consensus disorder prediction 431 454 - -
Csa03g02841 1422 MobiDBLite consensus disorder prediction 302 356 - -
Csa03g02841 1422 MobiDBLite consensus disorder prediction 904 922 - -
Csa03g02841 1422 MobiDBLite consensus disorder prediction 302 319 - -
Csa03g02841 1422 MobiDBLite consensus disorder prediction 869 883 - -
Csa03g02841 1422 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02841 1422 Pfam Protein kinase domain 21 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02841 1422 Gene3D Transferase(Phosphotransferase) domain 1 17 314 - -
Csa03g02841 1422 SUPERFAMILY ARM repeat 1083 1396 IPR016024 -
Csa03g02841 1422 MobiDBLite consensus disorder prediction 841 856 - -
Csa03g02841 1422 Gene3D - 1073 1417 IPR011989 -
Csa03g02841 1422 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 1378 - -
Csa03g02841 1422 SUPERFAMILY ARM repeat 588 782 IPR016024 -
Csa03g02841 1422 MobiDBLite consensus disorder prediction 386 406 - -
Csa03g02841 1422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Csa03g02841 1422 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672|GO:0006468
Csa03g02841 1422 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672|GO:0006468
Csa03g02841 1422 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672|GO:0006468
Csa03g02841 1422 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Csa03g02841 1422 SMART arm_5 1156 1200 IPR000225 GO:0005515
Csa03g02841 1422 SMART arm_5 701 744 IPR000225 GO:0005515
Csa03g02841 1422 SMART arm_5 616 656 IPR000225 GO:0005515
Csa03g02841 1422 SMART arm_5 1202 1241 IPR000225 GO:0005515
Csa03g02841 1422 MobiDBLite consensus disorder prediction 420 454 - -
Csa03g02841 1422 CDD STKc_Cdc7_like 19 274 - -
Csa03g02841 1422 MobiDBLite consensus disorder prediction 899 953 - -
Csa03g02841 1422 MobiDBLite consensus disorder prediction 469 499 - -
Csa03g02841 1422 MobiDBLite consensus disorder prediction 833 883 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00454 Csa-Chr1:2862807 Csa03g02841 Csa-Chr3:27159542 1.03E-25 dispersed
Csa03g02841 Csa-Chr3:27159542 Csa06g02446 Csa-Chr6:21834105 2.03E-72 dispersed
Csa05g01916 Csa-Chr5:22320443 Csa03g02841 Csa-Chr3:27159542 3.61E-43 dispersed
Csa03g02841 Csa-Chr3:27159542 Csa06g02922 Csa-Chr6:25325579 1.05E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78018 PF00069 Pkinase 1.30E-72 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02841 - - csv:101206469 2793.45