Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02847 ATGAGCTGCTTTAGCTGCTGTGAAGAAGATGAAATTCAGAAAGCAGCTGACAATGGAGGCATGTATGCAGGAAAACAAAATACTGGAAACAATGGGGGTTATCATAAACCCGAAGCTGCACCAGCAGTCACTCAAGCTGTTAAAATGCAACCAATATTGGTTCCTACCATACCCATCGAAGAACTATCAGAAGTAACGGATAACTTTGGAAATGATGCTTTGATTGGAGAGGGTTCATATGGGAGAGTATACTATGGTATGCTTAAAAACGGGCAGCCTGCAGCGATCAAGAAGTTAGATGCCAGCAAACAGCCTGATGATGAATTTTTAGCACAGGTCTCCATGGTCTCGAGGCTGAAGCACGGAAATTTTGTTCAATTGCTTGGCTATTGCGTTGATGGGAGTTCCCGCATACTAGTATACGAGTATGCTTCTAATGGATCACTTCATGATATTCTTCATGGAAGAAAAGGAGTGAAAGGAGCACAACCAGGTCCTGTTCTATCATGGGCACAACGTGTGAAAATTGCTGTAGGGGCTGCTAGAGGACTTGAATATTTGCATGAAAAGGCTGAGTCCCACATTATCCATCGTGATATTAAGTCCAGCAATGTACTCATCTTTGATGATGATGTTGCTAAAATTGCTGACTTTGATTTGTCCAATCAAGCTCCTGATATGGCAGCACGTCTTCACTCTACCCGTGTTCTTGGAACTTTTGGTTATCATGCTCCTGAATATGCTATGACTGGTCAATTGAATGCCAAGAGTGATGTTTATAGCTTTGGTGTAGTCTTGCTTGAACTTCTGACAGGGAGAAAACCTGTTGATCCTACACTACCACGAGGACAACAAAGTCTAGTTACTTGGGCTACACCAAAGCTGAGTGAAGATAAAGTTAGGCAGTGTGTCGATGCAAGGCTTGGTGGAGACTACCCCCCAAAGGCTGTAGCAAAGTTAGCAGCTGTTGCTGCCTTGTGTGTGCAGTATGAGGCAGATTTCCGGCCAAACATGAGCATTGTTGTCAAAGCTCTCCAGCATCTATTAAATGCCCGACCTGGACCGTCTGGTGATGCATCAAACTCGTAA 1089 43.89 MSCFSCCEEDEIQKAADNGGMYAGKQNTGNNGGYHKPEAAPAVTQAVKMQPILVPTIPIEELSEVTDNFGNDALIGEGSYGRVYYGMLKNGQPAAIKKLDASKQPDDEFLAQVSMVSRLKHGNFVQLLGYCVDGSSRILVYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKAESHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDPTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQHLLNARPGPSGDASNS* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27248544 27252920 - CsaV3_3G031530.1 Csa03g02847 523752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02847 362 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Csa03g02847 362 Gene3D Phosphorylase Kinase; domain 1 34 143 - -
Csa03g02847 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Csa03g02847 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Csa03g02847 362 Gene3D Transferase(Phosphotransferase) domain 1 144 354 - -
Csa03g02847 362 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02847 362 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02847 362 SUPERFAMILY Protein kinase-like (PK-like) 50 345 IPR011009 -
Csa03g02847 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 357 - -
Csa03g02847 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02847 Csa-Chr3:27248544 Csa06g00373 Csa-Chr6:3096514 2.64E-180 dispersed
Csa03g02847 Csa-Chr3:27248544 Csa07g01962 Csa-Chr7:19297443 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78019 PF07714 PK_Tyr_Ser-Thr 5.60E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02847 K13436 - csv:101223136 717.613