Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02851 ATGGAGGCTGGATATGGGGGCGAAGCTTGTCAGTTGTATGGTATGGGCACTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTAAATACGGTTGAATCTGGTCATTTGAGTAGGCAACTTTTCCCAATCGTCTCTGGGATTCCCCTGACAAACGGGGGTTCGTCCAATAGTTCCTCGTCATGCTCTGATGAAGCTAACATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGGAGGAGGGTCACTGTTATAGAAGATGAGAATCTCAATGATGAAGCACGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGATGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGGGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCGAAAGATTACCACAGACGACATAAAGTCTGCGAAACCCATTCTAAGGCGAGTAATGCACTTGTTGCTAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCACGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGCTATTTACTGTTAACTTTATTGCGAATACTTGCAAATTTACACTCCAATGGATCAAACCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGTCTTGCCTGCCAATCTAGTGAGCATGGGGGAAAAAACCTATCTGGGATTCTGCATGAACCCCAGAATTTGCTGAATAATGGAGCATTAATTGGTAAATCAGATCTAGTTTCGACTTTTCTCTCAAATGGTCCTCAGGTTCCTTTGAGATCTTCTAAACAACATGACACCCCTATACCTGAGACACCAGCACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCAAACAGCCCTCCCGCCTATTCTGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTCGATCTGAACGATGCTTATGTTGACTCAGACGATGGAATGGAAGATATTGAAAGACAAACACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCTCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCAAGCTCTACTGGAGAAGCCCAGAGCCGCACAGATCGCATCATTTTGAAATTATTTGGGAAAGCACCGAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGATTGGTTATCGCACAGTCCCACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAGTATACGTACGGCAGACCGAAGCTGCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAAAACTGGATGGGTTTATGTGCGGGTTCAGCATCAAATAGCTTTTGTTTATCAAGGTCAGGTTGTAGTTGACACCTCCTTGCCTCTTAGAAACAATAATTACTGTAGGATCACAAGTGTAAACCCAGTTGCTGTTTCTACATCTAAGAAGGCTATATTTTCAGTTAAAGGAATAAACTTGAGCCAACCTACGACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAAGTCAGGAAGCTTCAGATGAGTCAACAGAAAGTGATGATAACTTGAAGGCACAGGATGACAGCCAATGTGTTACCTTTTCCTGCTCTATTCCTGTTGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGCTCCTTTCCTTTTATAGTTGCAGAGGAGGACGTTTGTTCTGAGATCTGCTCACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAATGCGATGGAATTTATTCATGAAATTGGTTGGCTATTCCATAGAAATCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATATTCTTCGAGATGGGACCGTGGATGCTGGAGGTCACCCCTCCTTGAATCTCGCATTGATGGAGATGGGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTAGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGACAGTGCATCTGTTGATGGAGAGACTGATAGCTTCCTGTTTAAACCTAATGTCGTAGGCCCAGCTGGTTTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGATGCATTAACCAATGACCCGGGAATGGTGGGAATTGAGGCTTGGAAGAGTGCTCGAGATAGCACAGGCTCAACACCAGAGGATTATGCCCGTTTACGTGGCCATTACTCTTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGTCATGTAGTGCTTGATATTCCTAGTTCTCTCTCAGATGGTAGCTGGAATCAAAAGCAGAACACTGATTTTACCTCCTCCAGGTTTGAGATTGGTAGGACGGAACTAAAACCTAGTCAGCAGCACTGCAAGCTTTGTGTTAGGAAACCGCTGGGTTGTGGAACATCATCTAGCGCGTCTTTGGTCTACAGGCCAGCAATGCTTTCGATGGTGGCCATTGCTGCTGTTTGTGTTTGTGTGGCACTCCTATTTAAAAGCTCGCCTGAGGTTCTCTATGTCTTCCGGCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG 3042 44.41 MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESGHLSRQLFPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVERDAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHGGKNLSGILHEPQNLLNNGALIGKSDLVSTFLSNGPQVPLRSSKQHDTPIPETPAQAIGRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSTGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTVYVRQTEAAWDNLCHDLSTSFNRLLDVSDDAFWKTGWVYVRVQHQIAFVYQGQVVVDTSLPLRNNNYCRITSVNPVAVSTSKKAIFSVKGINLSQPTTRLLCAIEGKYLSQEASDESTESDDNLKAQDDSQCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICSLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDILRDGTVDAGGHPSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSASVDGETDSFLFKPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGIEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDGSWNQKQNTDFTSSRFEIGRTELKPSQQHCKLCVRKPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS* 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27286153 27297441 + CsaV3_3G031570.1 Csa03g02851 523756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02851 1013 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Csa03g02851 1013 Gene3D - 755 909 IPR036770 -
Csa03g02851 1013 MobiDBLite consensus disorder prediction 356 373 - -
Csa03g02851 1013 MobiDBLite consensus disorder prediction 327 373 - -
Csa03g02851 1013 Pfam SBP domain 156 229 IPR004333 GO:0003677
Csa03g02851 1013 MobiDBLite consensus disorder prediction 224 243 - -
Csa03g02851 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1012 - -
Csa03g02851 1013 MobiDBLite consensus disorder prediction 419 454 - -
Csa03g02851 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1012 IPR044817 GO:0003677
Csa03g02851 1013 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Csa03g02851 1013 SUPERFAMILY Ankyrin repeat 779 895 IPR036770 -
Csa03g02851 1013 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01244 Csa-Chr1:7740895 Csa03g02851 Csa-Chr3:27286153 1.16E-34 dispersed
Csa03g01404 Csa-Chr3:10499279 Csa03g02851 Csa-Chr3:27286153 3.50E-22 dispersed
Csa03g02851 Csa-Chr3:27286153 Csa04g02750 Csa-Chr4:26359110 7.43E-37 dispersed
Csa03g02851 Csa-Chr3:27286153 Csa01g00620 Csa-Chr1:3954235 4.42E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31299 PF03110 SBP 7.50E-30 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02851 - - csv:101203103 1970.28