Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02851 ATGGAGGCTGGATATGGGGGCGAAGCTTGTCAGTTGTATGGTATGGGCACTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTAAATACGGTTGAATCTGGTCATTTGAGTAGGCAACTTTTCCCAATCGTCTCTGGGATTCCCCTGACAAACGGGGGTTCGTCCAATAGTTCCTCGTCATGCTCTGATGAAGCTAACATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGGAGGAGGGTCACTGTTATAGAAGATGAGAATCTCAATGATGAAGCACGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGATGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGGGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCGAAAGATTACCACAGACGACATAAAGTCTGCGAAACCCATTCTAAGGCGAGTAATGCACTTGTTGCTAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCACGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGCTATTTACTGTTAACTTTATTGCGAATACTTGCAAATTTACACTCCAATGGATCAAACCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGTCTTGCCTGCCAATCTAGTGAGCATGGGGGAAAAAACCTATCTGGGATTCTGCATGAACCCCAGAATTTGCTGAATAATGGAGCATTAATTGGTAAATCAGATCTAGTTTCGACTTTTCTCTCAAATGGTCCTCAGGTTCCTTTGAGATCTTCTAAACAACATGACACCCCTATACCTGAGACACCAGCACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCAAACAGCCCTCCCGCCTATTCTGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTCGATCTGAACGATGCTTATGTTGACTCAGACGATGGAATGGAAGATATTGAAAGACAAACACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCTCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCAAGCTCTACTGGAGAAGCCCAGAGCCGCACAGATCGCATCATTTTGAAATTATTTGGGAAAGCACCGAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGATTGGTTATCGCACAGTCCCACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAGTATACGTACGGCAGACCGAAGCTGCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAAAACTGGATGGGTTTATGTGCGGGTTCAGCATCAAATAGCTTTTGTTTATCAAGGTCAGGTTGTAGTTGACACCTCCTTGCCTCTTAGAAACAATAATTACTGTAGGATCACAAGTGTAAACCCAGTTGCTGTTTCTACATCTAAGAAGGCTATATTTTCAGTTAAAGGAATAAACTTGAGCCAACCTACGACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAAGTCAGGAAGCTTCAGATGAGTCAACAGAAAGTGATGATAACTTGAAGGCACAGGATGACAGCCAATGTGTTACCTTTTCCTGCTCTATTCCTGTTGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGCTCCTTTCCTTTTATAGTTGCAGAGGAGGACGTTTGTTCTGAGATCTGCTCACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAATGCGATGGAATTTATTCATGAAATTGGTTGGCTATTCCATAGAAATCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATATTCTTCGAGATGGGACCGTGGATGCTGGAGGTCACCCCTCCTTGAATCTCGCATTGATGGAGATGGGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTAGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGACAGTGCATCTGTTGATGGAGAGACTGATAGCTTCCTGTTTAAACCTAATGTCGTAGGCCCAGCTGGTTTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGATGCATTAACCAATGACCCGGGAATGGTGGGAATTGAGGCTTGGAAGAGTGCTCGAGATAGCACAGGCTCAACACCAGAGGATTATGCCCGTTTACGTGGCCATTACTCTTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGTCATGTAGTGCTTGATATTCCTAGTTCTCTCTCAGATGGTAGCTGGAATCAAAAGCAGAACACTGATTTTACCTCCTCCAGGTTTGAGATTGGTAGGACGGAACTAAAACCTAGTCAGCAGCACTGCAAGCTTTGTGTTAGGAAACCGCTGGGTTGTGGAACATCATCTAGCGCGTCTTTGGTCTACAGGCCAGCAATGCTTTCGATGGTGGCCATTGCTGCTGTTTGTGTTTGTGTGGCACTCCTATTTAAAAGCTCGCCTGAGGTTCTCTATGTCTTCCGGCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG 3042 44.41 MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESGHLSRQLFPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVERDAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHGGKNLSGILHEPQNLLNNGALIGKSDLVSTFLSNGPQVPLRSSKQHDTPIPETPAQAIGRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSTGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTVYVRQTEAAWDNLCHDLSTSFNRLLDVSDDAFWKTGWVYVRVQHQIAFVYQGQVVVDTSLPLRNNNYCRITSVNPVAVSTSKKAIFSVKGINLSQPTTRLLCAIEGKYLSQEASDESTESDDNLKAQDDSQCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICSLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDILRDGTVDAGGHPSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSASVDGETDSFLFKPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGIEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDGSWNQKQNTDFTSSRFEIGRTELKPSQQHCKLCVRKPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS* 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27286153 27297441 + CsaV3_3G031570.1 Csa03g02851 523756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02851 1013 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Csa03g02851 1013 Gene3D - 755 909 IPR036770 -
Csa03g02851 1013 MobiDBLite consensus disorder prediction 356 373 - -
Csa03g02851 1013 MobiDBLite consensus disorder prediction 327 373 - -
Csa03g02851 1013 Pfam SBP domain 156 229 IPR004333 GO:0003677
Csa03g02851 1013 MobiDBLite consensus disorder prediction 224 243 - -
Csa03g02851 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1012 - -
Csa03g02851 1013 MobiDBLite consensus disorder prediction 419 454 - -
Csa03g02851 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1012 IPR044817 GO:0003677
Csa03g02851 1013 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Csa03g02851 1013 SUPERFAMILY Ankyrin repeat 779 895 IPR036770 -
Csa03g02851 1013 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02851 - - - csv:101203103 1970.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01244 Csa-Chr1:7740895 Csa03g02851 Csa-Chr3:27286153 1.16E-34 dispersed
Csa03g01404 Csa-Chr3:10499279 Csa03g02851 Csa-Chr3:27286153 3.50E-22 dispersed
Csa03g02851 Csa-Chr3:27286153 Csa04g02750 Csa-Chr4:26359110 7.43E-37 dispersed
Csa03g02851 Csa-Chr3:27286153 Csa01g00620 Csa-Chr1:3954235 4.42E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g02851 . 181 1014 SBP-box Gene Family AT2G47070 55.5 1.3e-239 826.2
Csa03g02851 . 25 1014 SBP-box Gene Family AT3G60030 54.5 8.6e-278 953.4
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50570 59.5 4.6e-38 155.6
Csa04g02750 . 1 1032 SBP-box Gene Family AT1G20980 50.5 8.7e-263 903.7
Csa04g02750 . 1 693 SBP-box Gene Family AT1G76580 50.8 4.3e-165 578.6
Csa01g00620 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Csa03g02851 . 181 1014 SBP-box Gene Family AT2G47070 55.5 1.3e-239 826.2
Csa01g00620 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Csa03g02851 . 25 1014 SBP-box Gene Family AT3G60030 54.5 8.6e-278 953.4
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50570 59.5 4.6e-38 155.6
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50670 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50670 59.5 4.6e-38 155.6
Csa04g02750 . 1 1032 SBP-box Gene Family AT1G20980 50.5 8.7e-263 903.7
Csa04g02750 . 1 693 SBP-box Gene Family AT1G76580 50.8 4.3e-165 578.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31299 PF03110 SBP 7.50E-30 No_clan Csa TF