Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Csa03g02852	ATGGCAGCCATGGCTCTTTCATCTACATTCACAGGAAAAGTTGTTCCTTTGAATGCATTTACCGAGCTCTCGTCCTCGGTTCGCAGCAACGGTAGAGTCACAATGAGGAAATCTGGAAAGCCAGCAGCTTCCTCAGGCAGCCCATGGTATGGTCCTGACCGTGTCAAGTACCTTGGACCGTTCTCTGGTGAGCCTCCATCTTACCTCAAAGGTGAATTCCCTGGTGACTATGGTTGGGACACTGCAGGTCTATCAGCTGACCCCGAGACATTTGCCAAGAACCGAGAGCTCGAAGTGATTCACAGTAGATGGGCCATGCTTGGGGCTCTAGGATGTGTATTCCCTGAGCTTCTTTCTAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCACAAATCTTCAGTGAGGGTGGCCTAGACTATCTTGGAAACCCAAGTCTTATTCATGCACAGAGCATTTTGGCAATTTGGGCATCTCAAGTAGTGTTAATGGGTGCTGTTGAAGGTTACCGTATTGCTGGAGGACCACTCGGAGAGATTACTGATCCCATCTACCCAGGTGGTAGCTTTGATCCCCTTGGGTTGGCTGATGATCCAGAGGCATTTTCAGAACTTAAGGTGAAAGAACTTAAGAATGGTCGTCTTGCAATGTTTTCCATGTTCGGGTTTTTCGTACAGGCCATTGTAACTGGAAAAGGTCCTTTGGAGAACCTTGCAGACCATCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCTACCAACTTTGTACCTGGAAAGTGA	798	47.74	MAAMALSSTFTGKVVPLNAFTELSSSVRSNGRVTMRKSGKPAASSGSPWYGPDRVKYLGPFSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK*	266

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
3	27304318	27305115	+	CsaV3_3G031580.1	Csa03g02852	523757

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Csa03g02852	265	Gene3D	Chlorophyll a/b binding protein domain	56	258	-	-
Csa03g02852	265	PANTHER	CHLOROPHYLL A-B BINDING PROTEIN 2, CHLOROPLASTIC	2	265	-	-
Csa03g02852	265	SUPERFAMILY	Chlorophyll a-b binding protein	48	262	-	-
Csa03g02852	265	Pfam	Chlorophyll A-B binding protein	65	231	IPR022796	-
Csa03g02852	265	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	2	265	IPR001344	GO:0009765\|GO:0016020

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Csa03g02852	K08912	LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1	-	csv:101203342	542.732

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Csa03g02852	Csa-Chr3:27304318	Csa06g03767	Csa-Chr6:29986415	2.09E-171	dispersed
	Csa05g02208	Csa-Chr5:24869407	Csa03g02852	Csa-Chr3:27304318	3.06E-39	dispersed

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Csa01g02395	.	1	399	Chloroplast and Mitochondria Gene Families	AT2G28800	64.4	8.4e-135	477.2
Csa02g01790	.	71	412	Chloroplast and Mitochondria Gene Families	AT2G28800	55.9	4.1e-97	352.1
Csa06g00534	.	3	256	Chloroplast and Mitochondria Gene Families	AT1G15820	80.1	2.1e-117	418.7
Csa01g01655	.	3	156	Chloroplast and Mitochondria Gene Families	AT1G15820	74.4	2.5e-62	235.7
Csa07g00262	.	1	266	Chloroplast and Mitochondria Gene Families	AT3G27690	89.9	1.1e-144	509.6
Csa06g01182	.	2	268	Chloroplast and Mitochondria Gene Families	AT3G27690	78.8	9.6e-122	433.3
Csa06g03766	.	2	266	Chloroplast and Mitochondria Gene Families	AT3G27690	76.4	9.0e-120	426.8
Csa06g03767	.	1	266	Chloroplast and Mitochondria Gene Families	AT3G27690	77.2	2.6e-119	425.2
Csa03g02852	.	1	266	Chloroplast and Mitochondria Gene Families	AT3G27690	77.3	5.8e-119	424.1
Csa01g02243	.	2	266	Chloroplast and Mitochondria Gene Families	AT3G27690	77.1	7.6e-119	423.7
Csa03g00595	.	5	265	Chloroplast and Mitochondria Gene Families	AT3G27690	66.8	5.7e-98	354.4
Csa04g02748	.	44	260	Chloroplast and Mitochondria Gene Families	AT3G27690	52.1	8.6e-54	207.6
Csa05g03116	.	70	273	Chloroplast and Mitochondria Gene Families	AT3G27690	52.6	1.4e-51	200.3
Csa05g02208	.	3	272	Chloroplast and Mitochondria Gene Families	AT3G61470	79.6	1.3e-127	452.6
Csa01g03007	.	58	263	Chloroplast and Mitochondria Gene Families	AT3G61470	65.5	8.6e-87	317.0
Csa01g00241	CCT,ECH	22	249	Chloroplast and Mitochondria Gene Families	AT3G61470	51.3	6.0e-64	241.1
Csa05g01755	.	1	198	Chloroplast and Mitochondria Gene Families	AT3G54890	82.6	2.2e-91	332.0
Csa04g01602	.	3	284	Chloroplast and Mitochondria Gene Families	AT3G08940	84.1	1.0e-136	483.0
Csa04g02748	.	44	267	Chloroplast and Mitochondria Gene Families	AT1G76570	80.4	1.9e-115	412.5
Csa01g03255	.	1	274	Chloroplast and Mitochondria Gene Families	AT1G61520	85.8	8.2e-136	479.9
Csa07g00262	.	1	266	Chloroplast and Mitochondria Gene Families	AT2G05070	90.2	7.2e-145	510.0
Csa06g01182	.	7	268	Chloroplast and Mitochondria Gene Families	AT2G05070	79.4	9.4e-121	429.9
Csa06g03766	.	5	266	Chloroplast and Mitochondria Gene Families	AT2G05070	77.9	2.3e-119	425.2
Csa01g02243	.	7	266	Chloroplast and Mitochondria Gene Families	AT2G05070	79.2	3.0e-119	424.9
Csa06g03767	.	1	266	Chloroplast and Mitochondria Gene Families	AT2G05070	78.2	3.0e-119	424.9
Csa03g02852	.	27	266	Chloroplast and Mitochondria Gene Families	AT2G05070	84.6	2.0e-118	422.2
Csa03g00595	.	11	265	Chloroplast and Mitochondria Gene Families	AT2G05070	68.9	1.3e-98	356.3
Csa04g02748	.	44	260	Chloroplast and Mitochondria Gene Families	AT2G05070	51.2	2.4e-52	202.6
Csa07g00262	.	1	237	Chloroplast and Mitochondria Gene Families	AT2G05100	89.9	1.2e-125	446.4
Csa06g01182	.	7	239	Chloroplast and Mitochondria Gene Families	AT2G05100	77.8	9.0e-102	367.1
Csa01g02243	.	7	237	Chloroplast and Mitochondria Gene Families	AT2G05100	78.0	3.4e-101	365.2
Csa06g03766	.	5	237	Chloroplast and Mitochondria Gene Families	AT2G05100	75.1	2.2e-100	362.5
Csa03g02852	.	27	237	Chloroplast and Mitochondria Gene Families	AT2G05100	83.4	2.9e-100	362.1
Csa06g03767	.	1	237	Chloroplast and Mitochondria Gene Families	AT2G05100	75.6	3.8e-100	361.7
Csa03g00595	.	11	236	Chloroplast and Mitochondria Gene Families	AT2G05100	68.1	7.1e-83	304.3
Csa05g03116	.	70	257	Chloroplast and Mitochondria Gene Families	AT2G05100	51.8	3.2e-43	172.6
Csa04g01602	.	3	167	Chloroplast and Mitochondria Gene Families	AT2G40100	72.8	1.2e-66	249.6
Csa06g01182	.	1	268	Chloroplast and Mitochondria Gene Families	AT1G29930	89.2	8.6e-138	486.5
Csa01g02243	.	1	266	Chloroplast and Mitochondria Gene Families	AT1G29930	86.6	5.7e-134	473.8
Csa06g03766	.	1	266	Chloroplast and Mitochondria Gene Families	AT1G29930	87.7	5.7e-134	473.8
Csa06g03767	.	1	266	Chloroplast and Mitochondria Gene Families	AT1G29930	87.3	1.3e-133	472.6
Csa03g02852	.	4	266	Chloroplast and Mitochondria Gene Families	AT1G29930	84.6	2.6e-126	448.4
Csa07g00262	.	3	266	Chloroplast and Mitochondria Gene Families	AT1G29930	78.7	2.4e-116	415.2
Csa03g00595	.	34	265	Chloroplast and Mitochondria Gene Families	AT1G29930	70.8	5.3e-95	344.4
Csa05g03116	.	53	273	Chloroplast and Mitochondria Gene Families	AT1G29930	51.1	1.7e-53	206.5
Csa06g01182	.	1	268	Chloroplast and Mitochondria Gene Families	AT1G29920	88.8	3.3e-137	484.6
Csa01g02243	.	1	266	Chloroplast and Mitochondria Gene Families	AT1G29920	86.2	2.2e-133	471.9
Csa06g03766	.	1	266	Chloroplast and Mitochondria Gene Families	AT1G29920	87.3	2.2e-133	471.9
Csa06g03767	.	1	266	Chloroplast and Mitochondria Gene Families	AT1G29920	86.9	4.9e-133	470.7
Csa03g02852	.	4	266	Chloroplast and Mitochondria Gene Families	AT1G29920	84.6	3.4e-126	448.0
Csa07g00262	.	30	266	Chloroplast and Mitochondria Gene Families	AT1G29920	83.8	3.2e-116	414.8
Csa03g00595	.	34	265	Chloroplast and Mitochondria Gene Families	AT1G29920	70.8	5.3e-95	344.4
Csa05g03116	.	53	273	Chloroplast and Mitochondria Gene Families	AT1G29920	51.1	1.7e-53	206.5
Csa06g01182	.	1	268	Chloroplast and Mitochondria Gene Families	AT1G29910	88.8	3.3e-137	484.6
Csa01g02243	.	1	266	Chloroplast and Mitochondria Gene Families	AT1G29910	86.2	2.2e-133	471.9
Csa06g03766	.	1	266	Chloroplast and Mitochondria Gene Families	AT1G29910	87.3	2.2e-133	471.9
Csa06g03767	.	1	266	Chloroplast and Mitochondria Gene Families	AT1G29910	86.9	4.9e-133	470.7
Csa03g02852	.	4	266	Chloroplast and Mitochondria Gene Families	AT1G29910	84.6	3.4e-126	448.0
Csa07g00262	.	30	266	Chloroplast and Mitochondria Gene Families	AT1G29910	83.8	3.2e-116	414.8
Csa03g00595	.	34	265	Chloroplast and Mitochondria Gene Families	AT1G29910	70.8	5.3e-95	344.4
Csa05g03116	.	53	273	Chloroplast and Mitochondria Gene Families	AT1G29910	51.1	1.7e-53	206.5
Csa05g03116	.	11	289	Chloroplast and Mitochondria Gene Families	AT4G10340	84.4	4.5e-137	484.2
Csa06g03766	.	37	253	Chloroplast and Mitochondria Gene Families	AT4G10340	52.0	6.0e-57	218.0
Csa06g03767	.	37	253	Chloroplast and Mitochondria Gene Families	AT4G10340	52.0	6.0e-57	218.0
Csa01g02243	.	37	253	Chloroplast and Mitochondria Gene Families	AT4G10340	51.6	7.8e-57	217.6
Csa06g01182	.	51	255	Chloroplast and Mitochondria Gene Families	AT4G10340	54.1	1.0e-56	217.2
Csa03g02852	.	49	253	Chloroplast and Mitochondria Gene Families	AT4G10340	53.6	1.7e-56	216.5
Csa07g00262	.	49	253	Chloroplast and Mitochondria Gene Families	AT4G10340	52.6	2.8e-54	209.1
Csa03g00595	.	46	252	Chloroplast and Mitochondria Gene Families	AT4G10340	54.0	2.0e-52	203.0
Csa06g01182	.	1	268	Chloroplast and Mitochondria Gene Families	AT2G34420	89.2	5.5e-137	483.8
Csa01g02243	.	1	266	Chloroplast and Mitochondria Gene Families	AT2G34420	86.2	1.1e-132	469.5
Csa06g03766	.	1	266	Chloroplast and Mitochondria Gene Families	AT2G34420	86.9	2.4e-132	468.4
Csa06g03767	.	1	266	Chloroplast and Mitochondria Gene Families	AT2G34420	86.6	5.3e-132	467.2
Csa03g02852	.	4	266	Chloroplast and Mitochondria Gene Families	AT2G34420	85.0	5.2e-127	450.7
Csa07g00262	.	3	266	Chloroplast and Mitochondria Gene Families	AT2G34420	77.2	1.4e-116	416.0
Csa03g00595	.	34	265	Chloroplast and Mitochondria Gene Families	AT2G34420	71.2	5.2e-95	344.4
Csa05g03116	.	53	273	Chloroplast and Mitochondria Gene Families	AT2G34420	50.2	8.4e-53	204.1
Csa06g01182	.	1	268	Chloroplast and Mitochondria Gene Families	AT2G34430	88.1	1.4e-135	479.2
Csa01g02243	.	1	266	Chloroplast and Mitochondria Gene Families	AT2G34430	86.5	1.8e-135	478.8
Csa06g03766	.	1	266	Chloroplast and Mitochondria Gene Families	AT2G34430	88.0	1.8e-135	478.8
Csa06g03767	.	1	266	Chloroplast and Mitochondria Gene Families	AT2G34430	87.6	4.0e-135	477.6
Csa03g02852	.	4	266	Chloroplast and Mitochondria Gene Families	AT2G34430	85.3	7.2e-129	456.8
Csa07g00262	.	30	266	Chloroplast and Mitochondria Gene Families	AT2G34430	82.9	2.3e-114	408.7
Csa03g00595	.	34	265	Chloroplast and Mitochondria Gene Families	AT2G34430	71.9	2.3e-95	345.5
Csa04g01602	.	2	284	Chloroplast and Mitochondria Gene Families	AT5G01530	85.2	2.6e-140	495.0
Csa03g00695	.	48	308	Chloroplast and Mitochondria Gene Families	AT5G40810	93.1	7.8e-144	506.5
Csa03g00695	.	1	308	Chloroplast and Mitochondria Gene Families	AT3G27240	86.4	3.8e-150	527.7
Csa06g01392	.	5	324	Chloroplast and Mitochondria Gene Families	AT2G30160	75.4	1.4e-142	502.7
Csa04g01643	.	9	311	Chloroplast and Mitochondria Gene Families	AT2G30160	65.2	9.0e-113	403.7
Csa06g01392	.	5	327	Chloroplast and Mitochondria Gene Families	AT1G07030	74.8	1.6e-141	499.2
Csa04g01643	.	5	311	Chloroplast and Mitochondria Gene Families	AT1G07030	68.5	2.2e-119	425.6
Csa07g01874	.	1	305	Chloroplast and Mitochondria Gene Families	AT2G47490	76.1	6.1e-135	477.2
Csa05g02065	.	11	312	Chloroplast and Mitochondria Gene Families	AT2G47490	64.9	7.2e-112	400.6
Csa05g02065	.	10	364	Chloroplast and Mitochondria Gene Families	AT1G25380	62.9	3.4e-121	431.8
Csa07g01874	.	11	297	Chloroplast and Mitochondria Gene Families	AT1G25380	64.2	4.0e-106	381.7
Csa01g01178	.	6	585	Chloroplast and Mitochondria Gene Families	AT4G21490	75.0	1.2e-258	889.0
Csa06g01045	.	1	586	Chloroplast and Mitochondria Gene Families	AT4G21490	68.3	7.1e-238	820.1
Csa07g00414	.	1	575	Chloroplast and Mitochondria Gene Families	AT4G21490	64.1	3.4e-224	774.6
Csa07g02377	.	5	186	Chloroplast and Mitochondria Gene Families	AT1G17530	65.4	4.8e-63	237.7
Csa07g02377	.	22	191	Chloroplast and Mitochondria Gene Families	AT3G04800	55.8	6.6e-44	174.1
Csa07g02377	.	15	191	Chloroplast and Mitochondria Gene Families	AT1G72750	69.2	3.4e-64	241.5
Csa05g02570	.	1	222	Chloroplast and Mitochondria Gene Families	AT1G26100	60.4	1.8e-70	262.7
Csa05g03088	.	1	226	Chloroplast and Mitochondria Gene Families	AT5G38630	70.9	5.2e-91	330.9
Csa03g04686	.	23	218	Chloroplast and Mitochondria Gene Families	AT4G25570	73.5	1.1e-82	303.5
Csa05g01961	.	5	222	Chloroplast and Mitochondria Gene Families	AT1G14730	51.4	6.9e-64	240.7
Csa05g01668	.	9	371	Chloroplast and Mitochondria Gene Families	AT5G14040	81.3	8.2e-171	596.7
Csa01g00018	.	26	334	Chloroplast and Mitochondria Gene Families	AT5G14040	84.6	1.8e-154	542.3
Csa03g02562	.	3	266	Chloroplast and Mitochondria Gene Families	AT5G14040	80.3	6.2e-126	447.6
Csa07g00198	.	11	298	Chloroplast and Mitochondria Gene Families	AT5G14040	52.7	5.3e-85	311.6
Csa05g01668	.	8	359	Chloroplast and Mitochondria Gene Families	AT3G48850	70.9	2.2e-144	508.8
Csa01g00018	.	27	334	Chloroplast and Mitochondria Gene Families	AT3G48850	74.7	8.0e-139	490.3
Csa03g02562	.	3	272	Chloroplast and Mitochondria Gene Families	AT3G48850	76.7	1.7e-120	429.5
Csa07g00198	.	11	297	Chloroplast and Mitochondria Gene Families	AT3G48850	50.9	1.9e-84	309.7
Csa07g00198	.	14	311	Chloroplast and Mitochondria Gene Families	AT2G17270	75.8	1.8e-131	465.7
Csa05g01668	.	63	353	Chloroplast and Mitochondria Gene Families	AT2G17270	52.2	7.4e-85	310.8
Csa03g02562	.	3	271	Chloroplast and Mitochondria Gene Families	AT2G17270	50.2	1.7e-73	273.1
Csa05g03044	.	1	269	Chloroplast and Mitochondria Gene Families	AT5G15640	77.6	1.2e-117	419.9
Csa03g01544	.	17	320	Chloroplast and Mitochondria Gene Families	AT5G15640	50.3	3.7e-79	292.0
Csa04g02565	.	12	345	Chloroplast and Mitochondria Gene Families	AT5G26200	68.3	1.3e-125	446.4
Csa07g02371	.	1	347	Chloroplast and Mitochondria Gene Families	AT5G26200	57.3	4.2e-105	378.3
Csa07g02371	.	1	351	Chloroplast and Mitochondria Gene Families	AT1G72820	74.9	3.5e-147	518.1
Csa04g02565	.	1	346	Chloroplast and Mitochondria Gene Families	AT1G72820	67.9	1.9e-129	459.1
Csa05g00252	CCT,ECH	81	286	Chloroplast and Mitochondria Gene Families	AT5G52570	52.2	2.7e-47	185.7
Csa03g01745	CCT,ECH	1	219	Chloroplast and Mitochondria Gene Families	AT4G25700	61.5	1.7e-67	252.7
Csa05g00252	CCT,ECH	68	204	Chloroplast and Mitochondria Gene Families	AT4G25700	73.0	1.9e-53	206.1
Csa07g00401	.	133	311	Chloroplast and Mitochondria Gene Families	AT4G03320	51.7	4.3e-55	211.8
Csa03g00597	.	69	357	Chloroplast and Mitochondria Gene Families	AT5G54290	80.1	1.9e-121	432.6
Csa01g01943	.	53	547	Chloroplast and Mitochondria Gene Families	AT2G18710	85.3	7.2e-240	826.6

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0000158	13	5	7	13	5	6	0	6	5	5	5	5	10	6	7	9	5	6	7	6	6	18	5	5	6	7	8	8	5	2	201