Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02859 ATGGAGGAAACTTTTGTTCCTCTTCGTGGAATCAAGAATGACTTGAAAGGGAGATTAGTGTGTTACAAACAAGACTGGACTGGTGGTTTGAGAGCTGGATATAGGATTTTGGCTCCCACCACTTACATATTCTTTGCCTCTGCAATTCCTGTCATTTCGTTTGGTGAACAGTTGGAGAGAAGTACTGATGGGGTACTGACTGCAGTTCAAACCTTAGCCTCCACAGCTCTTTGTGGGATCATTCACTCTATTGTTGGAGGGCAACCTTTGCTCATCTTGGGAGTGGCAGAGCCTACTGTTATTATGTATACCTTCATGTTTAATTTTGCGAAAGAACGACCTGAGTTAGGCAGGAATTTGTTTCTAGCATGGAGTGGATGGGTGTGTGTTTGGACTGCAGCCTTGTTGTTCTCAATGGCTATCTTAGGAGCTTGTTCCATCATCAATAGGTTCACACGACTGGCTGGTGAACTGTTTGGTTTGCTTATCGCAATGCTTTTCATGCAGCAAGCGGTCAAAGGACTTGTGGATGAGTTTCAAATCCCTGAACGAGAGAATCCAAAACTGATCGAGTTTATACCGTCTTGGAGGTTTGCCAATGGGATGTTTGCTTTGGTACTATCATTTGGCCTTCTATTCACTGCTTTAAGGAGCCGGAAAGCACGGTCATGGCGATATGGATCCGGTTGGCTCAGAAGCTTGATAGCAGACTATGGAGTACCGCTCATGGTTCTTGTTTGGACAGGTATTTCTTATATACCTTCAAAAAGTGTCCCAGAAGGAATCCCAAGGCGCCTCTTCAGCCCCAATCCATGGTCTCCTGGTGCGTACGAGAATTGGACTGTTATTAAGGATATGCTTGAGGTTCCAGTTATTTACATATGTGGAGCTTTCATCCCGGCTACAATGATTGCAGTGCTTTACTATTTCGACCATAGTGTTGCATCCCAACTTGCTCAGCAGAAAGAGTTTAATTTGAGGAAACCATCTTCTTACCATTATGATTTACTTCTATTGGGATTCTTGACCTTAATATGTGGTCTTCTTGGAATCCCTCCATCCAATGGAGTTATCCCCCAATCTCCCATGCATACAAAGAGCCTGGCTACTCTCAAACATCAGTTGCTGCGGAATAAACTTGTAGAAACAGCACGGAGTAGTATGAGAAAGAATGCCAGCTTAGGACAGTTGTATGGAAGTATGCAACAAGCATATCAACAAATGCAGACCCCCTTGATCTACCAACAGCCTTCAGTTCGTGGACTGAATGAGCTAAAAGAGACAACCATTCAAGCAGCTTCTAGTATGGGCAGTTTTGATGCTCCAGTCGATGAGACAATGTTTGACATTGAAAAGGAAATTGATGATCTATTGCCTGTTGAGGTGAAAGAACAGCGGGTCAGTAATTTGCTTCAAGCGGCAATGGTGGGAGGATGCGTTGCAGCCATGCCAGTCCTGAAGATGATCCCGACCTCGGTTCTATGGGGTTACTTTGCTTTTATGGCCATTGAAAGCTTGCCTGGTAACCAGTTTTGGGAAAGAATCTTGTTGCTCTTTACTGCACCCAGCAGAAGATACAAAGTTCTTGAGGATTACCATGCGACTTTCGTCGAAACTGTGCCATTCACATCCATTGTACTTTTTACCATTTTTCAAACAGTATATTTGTTCATATGTTTTGGACTAACATGGGTTCCGATTGCTGGGGTGATGTTTCCTCTGATGATCATGCTCCTCGTCCCTGTAAGACAATACCTTCTTCCCAAGTTTTTTAAAGGTGCGCATCTCCAAGACCTTGATGCTGCCGAATATGAAGAAGCTCCGGCTTTACCGTTCAATCTTGCGACGGAAGCCGAGCTGGGAGCAGGAGCATCTTTTGGTGGGGATGGAGAGATCTTGGATGAGGTCATCACCCGAAGCCGTGGTGAGTTTAGGCGTATTAGTAGTCCTAAAATCACAAGCTCCACGGCAACACCAATATCTGACAGAAAAAGTATAGACAGCCCTCATCGCTCTTTCAGCCCTCGGTTGAGCGAGCTAAAAGGAGAGCACAGTCCTCGAGCCGGTGGACGAGGGACACCGGGTCAGAGGAGTGCAGAAGCTAAACCATCCAGTCTGGGGAAGAGCCCTCTTAATAACACAGCATCAAAGTAG 2154 45.22 MEETFVPLRGIKNDLKGRLVCYKQDWTGGLRAGYRILAPTTYIFFASAIPVISFGEQLERSTDGVLTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWSGWVCVWTAALLFSMAILGACSIINRFTRLAGELFGLLIAMLFMQQAVKGLVDEFQIPERENPKLIEFIPSWRFANGMFALVLSFGLLFTALRSRKARSWRYGSGWLRSLIADYGVPLMVLVWTGISYIPSKSVPEGIPRRLFSPNPWSPGAYENWTVIKDMLEVPVIYICGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLICGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVETARSSMRKNASLGQLYGSMQQAYQQMQTPLIYQQPSVRGLNELKETTIQAASSMGSFDAPVDETMFDIEKEIDDLLPVEVKEQRVSNLLQAAMVGGCVAAMPVLKMIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDYHATFVETVPFTSIVLFTIFQTVYLFICFGLTWVPIAGVMFPLMIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPALPFNLATEAELGAGASFGGDGEILDEVITRSRGEFRRISSPKITSSTATPISDRKSIDSPHRSFSPRLSELKGEHSPRAGGRGTPGQRSAEAKPSSLGKSPLNNTASK* 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27379811 27384295 - CsaV3_3G031650.1 Csa03g02859 523764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02859 717 MobiDBLite consensus disorder prediction 698 717 - -
Csa03g02859 717 PANTHER ANION EXCHANGE PROTEIN 1 699 IPR003020 GO:0005452|GO:0006820|GO:0016020
Csa03g02859 717 PANTHER BORON TRANSPORTER 2-RELATED 1 699 - -
Csa03g02859 717 MobiDBLite consensus disorder prediction 664 686 - -
Csa03g02859 717 Pfam HCO3- transporter family 8 180 IPR011531 GO:0006820|GO:0016021
Csa03g02859 717 Pfam HCO3- transporter family 202 373 IPR011531 GO:0006820|GO:0016021
Csa03g02859 717 Pfam HCO3- transporter family 460 550 IPR011531 GO:0006820|GO:0016021
Csa03g02859 717 MobiDBLite consensus disorder prediction 648 663 - -
Csa03g02859 717 MobiDBLite consensus disorder prediction 648 717 - -
Csa03g02859 717 Gene3D Helical hairpin bin 18 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00855 Csa-Chr1:5356685 Csa03g02859 Csa-Chr3:27379811 0 dispersed
Csa03g02456 Csa-Chr3:22772161 Csa03g02859 Csa-Chr3:27379811 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02859 K24194 - csv:101205388 1422.14