Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02884 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCTAATAGCAGACAAGTTACATTCTCGAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAAGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTCGAGTTTTCTAGTTCTGGCATGAAGCACACTCTTGCAAGATACAACAAATGTGTAGAATCTTCAGATGCTACAGTAGACGTGCACAAGGTTGAGCGAGAGCATGAGGAGGTAGACATTCTACGAGAGGAAATAACAACTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACTGGCTTAGGCTTCAAAGAGTTGCAAAACCTGGAGCAACAGCTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAGCAACTAGAGCAATCAAGGGTACAGGAACAACGAGCAATGCTTGAGAACGAAACTCTGCGGAGACAGGTCAATGAGCTTCGGTGTCTGTTTCCGCCGGTTGATTGCCCCCTTCCAGCTTATCTTGAATACTGCTCCCTAGAGCAAAAGAATATTGGCATTAGAAGCCCTGATATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGAGTGAGAGAGATACTCATTCAAATGATTCAGGGGCTCAAATGGGCATATTATGA 753 43.43 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLARYNKCVESSDATVDVHKVEREHEEVDILREEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQVNELRCLFPPVDCPLPAYLEYCSLEQKNIGIRSPDMACNSEIERGDSDTTLHLGLPSHVYCKRKESERDTHSNDSGAQMGIL* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27586916 27592977 + CsaV3_3G031900.1 Csa03g02884 523789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02884 250 Coils Coil 85 105 - -
Csa03g02884 250 Coils Coil 122 142 - -
Csa03g02884 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa03g02884 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa03g02884 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa03g02884 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa03g02884 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Csa03g02884 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa03g02884 250 MobiDBLite consensus disorder prediction 231 250 - -
Csa03g02884 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa03g02884 250 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 228 - -
Csa03g02884 250 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa03g02884 250 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Csa03g02884 250 PANTHER MADS BOX PROTEIN 1 228 - -
Csa03g02884 250 Coils Coil 148 175 - -
Csa03g02884 250 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Csa03g02884 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa03g02884 250 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02884 Csa-Chr3:27586916 Csa04g01862 Csa-Chr4:18359391 2.60E-53 dispersed
Csa03g02884 Csa-Chr3:27586916 Csa03g04509 Csa-Chr3:39311564 9.49E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31300 PF01486 K-box 3.50E-17 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02884 - - csv:101218805 461.07