Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g02908 | ATGTGTGGTGGTCCAGAAAAATCTAATTCTTCATCGACTACAACAGCAAGCTCACCTAACCCCAAAGACATGAATCATTTAACCGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGTTTCTGACAATGATGCCGAAGGCTTCAAACGTTTGATGCAGTCTGATTTGTTTTCTCTGAACAAGTCTGGTCTTTGGTATGTTCGTCAAAAAGGCTCAAAACAAGTTGTTAATGAGCATAGGACTCCCCTGATGGTTGCTGCAACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCAGCTGGCACAGACAAGAGCACTGCTCTCCACTGTGCTACATCCAGTGGATCTGTGAATGCTGTTGATATTGTTGATTTGCTATTATCTGCTGGTGCCGACCCAAACTCCAAGGATGTTAATGGTGACCGCCCTGTTGATGTCATTTTTATTCATCCAAAGTTGCAGAAGCAGAATACTAGGTTCAAGCTCGAGGAACTTCTTAATAGTCATTCAAATGGATCAATGGACGTGTCCTGTTTACATTTGTCAATTAAAACACCCAATTCAGAGTCACCACCACTTTCTTCATCATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATTTCTTCTCCCAAATTTACTGATGGGTTTGGAAACTCTGCAAAGGAGAAGAAAGAATATCCAATTGATCCATCGCTTCCTGACATCAAGAACAGCATATATGCAACTGATGAGTTTCGCATGTTCTCTTTCAAGGTTAGACCTTGTTCTCGAGCATATTCTCATGATTGGACTGAGTGTCCTTTTGTCCACCCAGGGGAGAATGCTCGCAGAAGAGACCCAAGGAAGTTTCACTACAGCTGTGTTCCTTGCCCAGATTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCACATGGAGTGTTTGAGTGTTGGCTACATCCAGCACAGTACCGAACTCGTCTGTGCAAGGATGGTACCAGTTGCAATAGGCGGGTTTGCTTCTTTGCTCACACCAATGAAGAACTAAGGCCACTGTATGTGTCCACTGGATCTGCTGTCCCTTCCCCACGGTCAATTGGGTCAGCACCAACTGTAATGGATATGGCCACTGCATTGGGTCTTCTTCCTGGTTCTCCCTCATCGATGTCTGCTTTATCCCCATCTCCATTTACTCAATCCATGTCACCCTCATCTAATGGCGTATCTCACTCTTCTGTGAACTGGCAGCAGCCTAATGTGCCGACCCTTCATCTTCCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCATCTCTGAATGCAAGAGATATGCCTCTGGAGGATTTAAATGCCTTGCCAGACTTTGAAAATCAGCCACGGATTTTGAATGATATGAACTGTTTCTCTCAGCCTCGTCCGAGTGCTGTGTCTGTTAGTCGATCTGGCTGGACCCAAACACTAACCCCTAACAACCTTGAAGAGCTTTTTTCTTCTGAGATCTCTCTGTCTCCTCGATTCTCTGATCCAGCTGCCAATGTCTTTTCCCCTACCCGCAAATCAACAATGCTTAACCAATTCCAGCAGCAGCAGCAGAACATGTTATCACCTATTAATACAAGCATTATGTCCCCTAAGAATGTTGATCATCATTTGTTGCAGGCCTCCTTTGGAGTTTCATCCCCAGGAAGGATGTCACCGAGAAGCACTGAGCCACTGTCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACATCTTCGCACTCTCAGTTCGAGGGAGCTTGGATCTAACATTCCGAGTTCATTGATCGGATCTCCTGTCAATTCTTTGCCTAAATGGGGGTCACCCAATGGAAAGGTGGACTGGTCGGTTGGTAAGAATGAACTGGGTCAACTGCGGAGGTCATCGTCTTTTGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTTAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGCTGGCAGTGTCCGGGATGGGCACTGCAGCATCCGCTGAAGGGTACAAACAGAGGTGA | 2097 | 45.49 | MCGGPEKSNSSSTTTASSPNPKDMNHLTVDCEDSFYSLLELVSDNDAEGFKRLMQSDLFSLNKSGLWYVRQKGSKQVVNEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSAGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPNSKDVNGDRPVDVIFIHPKLQKQNTRFKLEELLNSHSNGSMDVSCLHLSIKTPNSESPPLSSSLEDEFPSPPKSISSPKFTDGFGNSAKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSMSALSPSPFTQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNALPDFENQPRILNDMNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISLSPRFSDPAANVFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQHLRTLSSRELGSNIPSSLIGSPVNSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAVSGMGTAASAEGYKQR* | 699 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 27768387 | 27773120 | + | CsaV3_3G032140.1 | Csa03g02908 | 523813 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g02908 | 698 | MobiDBLite | consensus disorder prediction | 199 | 241 | - | - | |
Csa03g02908 | 698 | MobiDBLite | consensus disorder prediction | 399 | 423 | - | - | |
Csa03g02908 | 698 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Csa03g02908 | 698 | ProSiteProfiles | Ankyrin repeat region circular profile. | 115 | 149 | - | - | |
Csa03g02908 | 698 | Pfam | Ankyrin repeats (3 copies) | 76 | 149 | IPR002110 | GO:0005515 | |
Csa03g02908 | 698 | MobiDBLite | consensus disorder prediction | 199 | 228 | - | - | |
Csa03g02908 | 698 | PANTHER | UNKEMPT FAMILY MEMBER | 17 | 688 | IPR045234 | - | |
Csa03g02908 | 698 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 | 17 | 688 | - | - | |
Csa03g02908 | 698 | PRINTS | Ankyrin repeat signature | 134 | 148 | IPR002110 | GO:0005515 | |
Csa03g02908 | 698 | PRINTS | Ankyrin repeat signature | 81 | 96 | IPR002110 | GO:0005515 | |
Csa03g02908 | 698 | ProSiteProfiles | Zinc finger C3H1-type profile. | 302 | 324 | IPR000571 | GO:0046872 | |
Csa03g02908 | 698 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Csa03g02908 | 698 | SMART | ANK_2a | 80 | 110 | IPR002110 | GO:0005515 | |
Csa03g02908 | 698 | SMART | ANK_2a | 115 | 147 | IPR002110 | GO:0005515 | |
Csa03g02908 | 698 | SUPERFAMILY | Ankyrin repeat | 37 | 160 | IPR036770 | - | |
Csa03g02908 | 698 | ProSiteProfiles | Ankyrin repeat profile. | 115 | 150 | IPR002110 | GO:0005515 | |
Csa03g02908 | 698 | SMART | c3hfinal6 | 332 | 355 | IPR000571 | GO:0046872 | |
Csa03g02908 | 698 | SMART | c3hfinal6 | 297 | 323 | IPR000571 | GO:0046872 | |
Csa03g02908 | 698 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 302 | 322 | IPR000571 | GO:0046872 | |
Csa03g02908 | 698 | Gene3D | - | 6 | 207 | IPR036770 | - | |
Csa03g02908 | 698 | Gene3D | - | 297 | 360 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g02908 | Csa-Chr3:27768387 | Csa03g03622 | Csa-Chr3:32257914 | 0 | dispersed | |
Csa03g02908 | Csa-Chr3:27768387 | Csa06g01420 | Csa-Chr6:12114956 | 2.00E-159 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31301 | PF12796 | Ank_2 | 1.20E-10 | CL0465 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g02908 | - | - | csv:101205376 | 1308.51 |