Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02908 ATGTGTGGTGGTCCAGAAAAATCTAATTCTTCATCGACTACAACAGCAAGCTCACCTAACCCCAAAGACATGAATCATTTAACCGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGTTTCTGACAATGATGCCGAAGGCTTCAAACGTTTGATGCAGTCTGATTTGTTTTCTCTGAACAAGTCTGGTCTTTGGTATGTTCGTCAAAAAGGCTCAAAACAAGTTGTTAATGAGCATAGGACTCCCCTGATGGTTGCTGCAACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCAGCTGGCACAGACAAGAGCACTGCTCTCCACTGTGCTACATCCAGTGGATCTGTGAATGCTGTTGATATTGTTGATTTGCTATTATCTGCTGGTGCCGACCCAAACTCCAAGGATGTTAATGGTGACCGCCCTGTTGATGTCATTTTTATTCATCCAAAGTTGCAGAAGCAGAATACTAGGTTCAAGCTCGAGGAACTTCTTAATAGTCATTCAAATGGATCAATGGACGTGTCCTGTTTACATTTGTCAATTAAAACACCCAATTCAGAGTCACCACCACTTTCTTCATCATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATTTCTTCTCCCAAATTTACTGATGGGTTTGGAAACTCTGCAAAGGAGAAGAAAGAATATCCAATTGATCCATCGCTTCCTGACATCAAGAACAGCATATATGCAACTGATGAGTTTCGCATGTTCTCTTTCAAGGTTAGACCTTGTTCTCGAGCATATTCTCATGATTGGACTGAGTGTCCTTTTGTCCACCCAGGGGAGAATGCTCGCAGAAGAGACCCAAGGAAGTTTCACTACAGCTGTGTTCCTTGCCCAGATTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCACATGGAGTGTTTGAGTGTTGGCTACATCCAGCACAGTACCGAACTCGTCTGTGCAAGGATGGTACCAGTTGCAATAGGCGGGTTTGCTTCTTTGCTCACACCAATGAAGAACTAAGGCCACTGTATGTGTCCACTGGATCTGCTGTCCCTTCCCCACGGTCAATTGGGTCAGCACCAACTGTAATGGATATGGCCACTGCATTGGGTCTTCTTCCTGGTTCTCCCTCATCGATGTCTGCTTTATCCCCATCTCCATTTACTCAATCCATGTCACCCTCATCTAATGGCGTATCTCACTCTTCTGTGAACTGGCAGCAGCCTAATGTGCCGACCCTTCATCTTCCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCATCTCTGAATGCAAGAGATATGCCTCTGGAGGATTTAAATGCCTTGCCAGACTTTGAAAATCAGCCACGGATTTTGAATGATATGAACTGTTTCTCTCAGCCTCGTCCGAGTGCTGTGTCTGTTAGTCGATCTGGCTGGACCCAAACACTAACCCCTAACAACCTTGAAGAGCTTTTTTCTTCTGAGATCTCTCTGTCTCCTCGATTCTCTGATCCAGCTGCCAATGTCTTTTCCCCTACCCGCAAATCAACAATGCTTAACCAATTCCAGCAGCAGCAGCAGAACATGTTATCACCTATTAATACAAGCATTATGTCCCCTAAGAATGTTGATCATCATTTGTTGCAGGCCTCCTTTGGAGTTTCATCCCCAGGAAGGATGTCACCGAGAAGCACTGAGCCACTGTCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACATCTTCGCACTCTCAGTTCGAGGGAGCTTGGATCTAACATTCCGAGTTCATTGATCGGATCTCCTGTCAATTCTTTGCCTAAATGGGGGTCACCCAATGGAAAGGTGGACTGGTCGGTTGGTAAGAATGAACTGGGTCAACTGCGGAGGTCATCGTCTTTTGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTTAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGCTGGCAGTGTCCGGGATGGGCACTGCAGCATCCGCTGAAGGGTACAAACAGAGGTGA 2097 45.49 MCGGPEKSNSSSTTTASSPNPKDMNHLTVDCEDSFYSLLELVSDNDAEGFKRLMQSDLFSLNKSGLWYVRQKGSKQVVNEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSAGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPNSKDVNGDRPVDVIFIHPKLQKQNTRFKLEELLNSHSNGSMDVSCLHLSIKTPNSESPPLSSSLEDEFPSPPKSISSPKFTDGFGNSAKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSMSALSPSPFTQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNALPDFENQPRILNDMNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISLSPRFSDPAANVFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQHLRTLSSRELGSNIPSSLIGSPVNSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAVSGMGTAASAEGYKQR* 699
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 27768387 27773120 + CsaV3_3G032140.1 Csa03g02908 523813
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02908 698 MobiDBLite consensus disorder prediction 199 241 - -
Csa03g02908 698 MobiDBLite consensus disorder prediction 399 423 - -
Csa03g02908 698 MobiDBLite consensus disorder prediction 1 25 - -
Csa03g02908 698 ProSiteProfiles Ankyrin repeat region circular profile. 115 149 - -
Csa03g02908 698 Pfam Ankyrin repeats (3 copies) 76 149 IPR002110 GO:0005515
Csa03g02908 698 MobiDBLite consensus disorder prediction 199 228 - -
Csa03g02908 698 PANTHER UNKEMPT FAMILY MEMBER 17 688 IPR045234 -
Csa03g02908 698 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 17 688 - -
Csa03g02908 698 PRINTS Ankyrin repeat signature 134 148 IPR002110 GO:0005515
Csa03g02908 698 PRINTS Ankyrin repeat signature 81 96 IPR002110 GO:0005515
Csa03g02908 698 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
Csa03g02908 698 MobiDBLite consensus disorder prediction 1 24 - -
Csa03g02908 698 SMART ANK_2a 80 110 IPR002110 GO:0005515
Csa03g02908 698 SMART ANK_2a 115 147 IPR002110 GO:0005515
Csa03g02908 698 SUPERFAMILY Ankyrin repeat 37 160 IPR036770 -
Csa03g02908 698 ProSiteProfiles Ankyrin repeat profile. 115 150 IPR002110 GO:0005515
Csa03g02908 698 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Csa03g02908 698 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Csa03g02908 698 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 322 IPR000571 GO:0046872
Csa03g02908 698 Gene3D - 6 207 IPR036770 -
Csa03g02908 698 Gene3D - 297 360 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02908 Csa-Chr3:27768387 Csa03g03622 Csa-Chr3:32257914 0 dispersed
Csa03g02908 Csa-Chr3:27768387 Csa06g01420 Csa-Chr6:12114956 2.00E-159 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31301 PF12796 Ank_2 1.20E-10 CL0465 Csa TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02908 - - csv:101205376 1308.51