Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02942 ATGGAGTTGGATTTGAGATTAGGAAATGATCCTTCTCCTTCTTCACATCCAACACCCCTTCGTTTTTCCCTTTCTTTTCCCTCCATTGATCTTCAACATCAAGCTCACAATCACATTCACCAAAACCACCTCCTTCTCCACTCTCTTAATTCTCCTCCACCACCCTCCGCCCCCGCCTCTCGCCCATCTTCTCCAACCGAAGGATCAGGAGGAGGAGTTTTTACGGAGGTGATTAGCGGAGCGTCGGCTGATGGGGGAGGAGAAATAGGTGGAAGATCGTCAAAGGGAATAGTTTGGTCAATAGGAAAGAATAATAGAGAAGAAGAAAGAAAAGGGAAAAGTGAGAATGAATTGGAAGAAGAAGAAGAACAGGAAGAAATGGATATGAATATGATTAGCAGTGGAAGAAAAAAACTGAGGCTTTCAAGACAACAATCAGCATTTCTTGAAGAAAGCTTCAAAGAACACCACACCCTTTACCCTAAGCAAAAGCTAGAAGTTGCAAGAAGGTTGAATCTTCGTCCTCGTCAAGTAGAAGTTTGGTTTCAAAACAGACGAGCAAGAACGAAGTTGAAACAAAATGAAGTAGAATGTGAATACTTGAAGAAATGTTGTGCAACACTTACTCAACAAAACACAAAGCTTCAAAAGGAACTTCAGGATTTGAAAGCTCTAAAAACTACTCATTCTCTGTTCATCAACTCTCCCCCTACCACTCTCACCTTGTGCGCATCTTGTGAACGCGCTGTCGCAACCCCAGTCTCCCGCTGA 771 43.06 MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPTEGSGGGVFTEVISGASADGGGEIGGRSSKGIVWSIGKNNREEERKGKSENELEEEEEQEEMDMNMISSGRKKLRLSRQQSAFLEESFKEHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARTKLKQNEVECEYLKKCCATLTQQNTKLQKELQDLKALKTTHSLFINSPPTTLTLCASCERAVATPVSR* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28028638 28031173 - CsaV3_3G032480.1 Csa03g02942 523847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02942 256 SMART HOX_1 134 196 IPR001356 GO:0003677
Csa03g02942 256 MobiDBLite consensus disorder prediction 102 117 - -
Csa03g02942 256 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX11-LIKE 1 254 - -
Csa03g02942 256 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Csa03g02942 256 Gene3D - 140 190 - -
Csa03g02942 256 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Csa03g02942 256 MobiDBLite consensus disorder prediction 46 130 - -
Csa03g02942 256 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Csa03g02942 256 Coils Coil 205 228 - -
Csa03g02942 256 PANTHER - 1 254 - -
Csa03g02942 256 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Csa03g02942 256 Coils Coil 104 124 - -
Csa03g02942 256 CDD homeodomain 136 193 IPR001356 GO:0003677
Csa03g02942 256 MobiDBLite consensus disorder prediction 1 21 - -
Csa03g02942 256 SUPERFAMILY Homeodomain-like 128 193 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02942 Csa-Chr3:28028638 Csa03g03564 Csa-Chr3:31859666 5.94E-53 dispersed
Csa03g02942 Csa-Chr3:28028638 Csa07g02054 Csa-Chr7:19866731 2.73E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31304 PF00046 Homeodomain 2.20E-14 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02942 K09338 - csv:101208907 387.497