Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02957 ATGGGGATTGAAACAGTTGAGAATGACGTCATTTTCCGGTCTAAACTACCGGACATCTACATCCCAAAACACCTTCCTCTGCATTCCTACTGCCTACAAGAAAACGCCGCCAAAATCGGCCACCGGACTTGCCTGATCAACGGCGTCACCGGGGAATCCTTCACCTACAACGACGTCGATCTTACCACACGCAAGGTGGCCTCCGGATTAAACAAACTCGGCATTACAAAACGCGACGTAATCATGCTTCTCCTCCCAAATTCACCGGAATTCGTCTTTGCTTTCCTTGGGGCCTCCTACCTCGGCGCAATCATGACGGCCGCAAACCCTTTCTTCACCGCAGCAGAAATCGGAAAGCAAGCAAAAGGATCAAAATCAAAACTAATCATAACGCAATCATCGTACTACGAAAAAGTAAAGGAAATAACAGAGGAATTGCCAGAGGTTAAAATCATGACCGTCGATTCTCCTCCCGACGGTTGTTTATGGTTTGGTGATCTAATTAAAGCCGACGAAAGAGAGGTTCCGAGGGTGGATATCGACCCAGAAGACGTGGTTGCGCTGCCGTATTCGTCGGGAACGACGGGATTGCCGAAGGGAGTGATGCTTACACATAAAAGTTTGGTTACGAGTGTGGCTCAGCAAGTGGATGGGGAAAATCCAAATCTGTATTATGGACATGAGGACGTGATTCTGTGTGTTCTGCCCTTGTTTCATATTTATTCTTTGAATTCGGTTTTGCTGTGTGGATTAAGAGCTGGAAGTACCATTTTGATTATGCCCAAATTTGAGATCGGTTTGCTTTTGCAATTGGCGGAGAAATATGGAGTTACCGTTGCGCCCATCGTGCCGCCCATCGTACTGGCTATTGCAAAGTCGCCGGAGCTTGAGAAGTATGACCTTTCGTCAATCAGAATTATTAAATCCGGCGGTGCTCCGCTTGGGAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCTAAGGCTGTGCTCGGACAGGGATATGGAATGACGGAGGCGGGTCCAGTTCTAACAATGGGATTGGCATTTGCAAAGGACCCATTTCCGATGAAACCAGGCGCCTGCGGCACTGTCGTCAGAAACGCGGAGATGAAGATCGTCGACACCGAAACCGGCAGTTCCTTGCCTCGTAACACTCCAGGAGAGATCTGCATCAGAGGCGATCAAATCATGAAAGGCTATCTCAACAATCCAGAGGCAACGGCGGCCACTATCGACAAGGATGGGTGGTTGCACACCGGGGATATTGGATTCATCGACGACGATGATGAGATGTTCATTGTGGATCGGTTGAAGGAACTGATCAAGTACAAGGGGTTTCAAGTGGCTCCGGCGGAACTGGAAGCTCTGTTGTTGACTCATCCGGTCATCTCTGATGCCGCCGTTGTTCCAATGAAAGATGAACAAGCTGGAGAAGTTCCCGTCGCGTTCGTCGTGAAATTGAAGAATTCTGAAGCCAGTGAAGATGAAATTAAACAGTTTATTTCAAAACAGGTGGTTTTCTACAAAAGAATAAACCGGGTGTTTTTCATAGAGGCAATTCCCAAATCGCCCTCGGGAAAGATCTTGAGGAAGGAGTTGAGGGCAAAGTTGGCAGCTGCTTTTCCAACTTCTAATTAA 1641 47.9 MGIETVENDVIFRSKLPDIYIPKHLPLHSYCLQENAAKIGHRTCLINGVTGESFTYNDVDLTTRKVASGLNKLGITKRDVIMLLLPNSPEFVFAFLGASYLGAIMTAANPFFTAAEIGKQAKGSKSKLIITQSSYYEKVKEITEELPEVKIMTVDSPPDGCLWFGDLIKADEREVPRVDIDPEDVVALPYSSGTTGLPKGVMLTHKSLVTSVAQQVDGENPNLYYGHEDVILCVLPLFHIYSLNSVLLCGLRAGSTILIMPKFEIGLLLQLAEKYGVTVAPIVPPIVLAIAKSPELEKYDLSSIRIIKSGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKDPFPMKPGACGTVVRNAEMKIVDTETGSSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDKDGWLHTGDIGFIDDDDEMFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKLKNSEASEDEIKQFISKQVVFYKRINRVFFIEAIPKSPSGKILRKELRAKLAAAFPTSN* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28139017 28142483 - CsaV3_3G032630.1 Csa03g02957 523862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02957 546 CDD 4CL 21 534 - -
Csa03g02957 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 540 - -
Csa03g02957 546 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Csa03g02957 546 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 540 - -
Csa03g02957 546 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Csa03g02957 546 Gene3D - 439 541 IPR045851 -
Csa03g02957 546 Gene3D - 5 438 IPR042099 -
Csa03g02957 546 Pfam AMP-binding enzyme 32 444 IPR000873 -
Csa03g02957 546 SUPERFAMILY Acetyl-CoA synthetase-like 20 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01352 Csa-Chr1:8805865 Csa03g02957 Csa-Chr3:28139017 2.56E-136 dispersed
Csa01g02142 Csa-Chr1:18604088 Csa03g02957 Csa-Chr3:28139017 0 dispersed
Csa03g02957 Csa-Chr3:28139017 Csa07g02072 Csa-Chr7:20015822 0 dispersed
Csa03g02957 Csa-Chr3:28139017 Csa07g02071 Csa-Chr7:20008998 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02957 K01904 - csv:101215427 1072.0