Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02963 ATGGAGAAGAAGACTTATCCCATAGGTGAAGATTCTTATATTCTATATGAAGAGGTTGGGCAGGGTGTGAGCGCTTCAGTTCACCGTGCTCTTTGTAAATCTCTCAATGAAATCGTCGCCATCAAGATTCTCGATTTTGAGCGTGAGAATTGTGATCTGGCTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCATCCGAATGTCCTTAAATCACACTGCTCCTTTGTCAATGGCCATGATTTGTGGATTGTTATGCCCTACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAGGTCGTGATAGCAACAGTATTGCGAGAAGTATTGAAGGGAGTTGAATATCTTCATAATCATGGACATATACATCGGGATATAAAAGCAGGGAATGTTCTCATTGATTCACGTGGTGGAATCAAGCTAGGAGACTTTGGTGTTTCTGCTTGCCTTTTTGATTCAGGTGATCGACAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCCGAGGTTATGGAGCAATTAAATGGTTATGACTTTAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCCCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCAGGGCTTGATTATGAGAGAGATAAAAAATTTTCAAAGTCTTTCAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGACCTTCTGCAAGTAAGCTGCTAAAGCATTCTTTTTTTAGGCAAGCCCGGTCAAATGATTACATTGCACGCGCCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTAGCACAAAAGAAAATTTCAGATGGAAAAAAGGAAGAATTATCACAGAATGAATATAAACGAGGCATCAGTGGATGGAACTTCAATCTTGATGATTTAAAGGCCCAGGCATCTCTGATTCAGGAATTTGAAGAGTCTATTAGTGAAATGAGTGAAGTAGGGAGCTCAAATTCATTGAATGCACTTGATGTGCAAGAAAAGAAATTACAAGGCCAAAATTCTTCAGAAATTTCAGATGTTGAAGAGAATGCCATGCTCCGGAGACAACCCTCCATGAAAGCAAATGATACAGTAAATGGTAAAAAATCTATCAATGAATCAACAAGTATTGGTTCTTGCTCCCAACATCAGTCTTCACCCCGCCATGATAATCAAACTGAGAATGGCTCCAATGAAGAGGTTAATTTGGAGAGCAGCAGAAGAATTTTGGGGAATACTCCTAATACTATCCAACATAAAAGAAGTATTTCTTCTAATACCTCTATTCAACAAGAAGTCAGTTTGCCTCTGAACAGAAGAGAGAGTTACGAGATAGAAAAGAATGGTGCCAATGGCAGTCCTGCAATGGGAGTGACTTCCCAGGCAGTAGATGATGCACTTTCTGATTCTCAGTCTAAAGATCCCAAATCATCATTAAGTCCAGCAATAACTGAAGAGGAACAGGATGAGAAAGCGAAGGCACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACGTCAGAGAGTGTCGATCTAGAAAAGGCAGCGGCATCCCCTATTCTGCAAAAAAGTCACAGTATGCAGGTGATTACCTCAAATTGTGCTACTCCTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACTGACACCTCTACCTTCATCTGATGCTATACCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAGGCAAATCTCAACTGGAGAATTTTCAGCAGATGGCGTAGTTGATGTCTCAGCGGCACATATAACAGCAACGGAGAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTACTTAACGAAGTAACTGAGTTACAGTGGAGGATATTACGGGCGAGAGATGAAATCCAAAGATTAAAATTAAACAATGCAGGTTAA 2094 40.93 MEKKTYPIGEDSYILYEEVGQGVSASVHRALCKSLNEIVAIKILDFERENCDLASIYREVQTMILVDHPNVLKSHCSFVNGHDLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATVLREVLKGVEYLHNHGHIHRDIKAGNVLIDSRGGIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFRQARSNDYIARALLEGLPVLGDRIKALKRKEEDMLAQKKISDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEMSEVGSSNSLNALDVQEKKLQGQNSSEISDVEENAMLRRQPSMKANDTVNGKKSINESTSIGSCSQHQSSPRHDNQTENGSNEEVNLESSRRILGNTPNTIQHKRSISSNTSIQQEVSLPLNRRESYEIEKNGANGSPAMGVTSQAVDDALSDSQSKDPKSSLSPAITEEEQDEKAKAPVIQQKGRFKVTSESVDLEKAAASPILQKSHSMQVITSNCATPLPSNLPTPLLTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMRQISTGEFSADGVVDVSAAHITATEKSLLEAAHEREKDLLNEVTELQWRILRARDEIQRLKLNNAG* 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28193381 28201823 + CsaV3_3G032690.1 Csa03g02963 523868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02963 697 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02963 697 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Csa03g02963 697 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Csa03g02963 697 Pfam Protein kinase domain 15 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02963 697 SUPERFAMILY Protein kinase-like (PK-like) 11 275 IPR011009 -
Csa03g02963 697 Coils Coil 660 694 - -
Csa03g02963 697 MobiDBLite consensus disorder prediction 398 478 - -
Csa03g02963 697 MobiDBLite consensus disorder prediction 504 536 - -
Csa03g02963 697 CDD STKc_OSR1_SPAK 11 274 - -
Csa03g02963 697 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 696 - -
Csa03g02963 697 MobiDBLite consensus disorder prediction 504 523 - -
Csa03g02963 697 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 696 - -
Csa03g02963 697 Gene3D Transferase(Phosphotransferase) domain 1 94 327 - -
Csa03g02963 697 MobiDBLite consensus disorder prediction 375 481 - -
Csa03g02963 697 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02963 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101211076 1337.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02963 Csa-Chr3:28193381 Csa05g01916 Csa-Chr5:22320443 0 dispersed
Csa03g02963 Csa-Chr3:28193381 Csa02g00036 Csa-Chr2:320884 8.65E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g02963 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g02327 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G53165 62.8 5.8e-223 770.8
Csa05g01193 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.1e-67 253.4
Csa04g02327 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.4 1.0e-230 796.6
Csa05g01193 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.4e-67 254.6
Csa05g01193 . 4 830 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 2.1e-240 828.9
Csa04g02327 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.4 6.3e-67 252.7
Csa05g01916 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.8 5.7e-255 877.1
Csa03g00090 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.3 3.0e-246 848.2
Csa03g00090 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 3.8e-246 847.8
Csa03g02963 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 61.7 2.1e-131 466.5
Csa03g00090 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 1.5e-118 423.7
Csa03g02963 . 1 680 MAP Kinase Kinase Kinase Kinase AT1G79640 58.7 6.2e-214 740.7
Csa05g01916 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 1.6e-102 370.2
Csa03g02963 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 7.3e-87 318.2
Csa03g00090 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 8.3e-75 278.1
Csa03g01242 . 32 497 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 2.6e-140 495.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78023 PF00069 Pkinase 1.10E-58 CL0016 Csa PK