Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02968 ATGGCGGATCTCAAAGAGCGGTTGCTTCCACCAAAACCTGCTTCGGCTATTAATCTTAGGGAGGCAATTAATAATCGACCATCAGCCTCTGGCAGGGTGCCTTTTCAAGGTGTGGATGTTCTAGGGTTGAAGAAGCGAGGTCAGGGACTTAGATCTTGGATCCGAGTAGATTCCTCTGGGAATTCCCAGATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGGTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTAGTCAATCTAGAGCAGATTCGATGCATTATAACAGCTGATGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTACTGCAGTATGTGGTCGAGCTACAAAGACGATTAAAAGCCACTGGGGTTGATGAGGTTTGGCAGAATGATGCAAATCACGGTGCTGACTTAAACAGAAGAAGAGGAAGTAGGAATTTTGATAATGTATTTGTAAACACCTCTCCTGATTATCTGCCCTTTGAGTTCAGAGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGATGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAACAACTTATGGATGATGATGGAGATATGGCAGAAATGTATCTCACCGAGAAGAAAATGAGAATGGAGTCATTTGTTTATGGTGATCAGTCTGTGACTGGATACAGATCAATTGATGGAGCGTCTATTTCTGCTCCTGTTTCTCCTGTATCTTCACCACCTGAAACTCGTAGACTCGAGAAGAGCCTGAGCATTGCGAGGAGTCGGCATGAAAGCACAAGAAGTTCAGAAAGTACCAATGAAAATATAGAGGAGCTCGAAATGCTACTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAATAAGTTGACATCGTTGAAGGAATACATCGACGACACAGAAGATTTCATCAACATCCAGTTGGATAATGTTCGTAATCAGTTGATCCAGTTTGAGCTACTGCTCACTACTGCAACATTTGTTGTTGCCATTTTTGGGGTGGTGGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCTGATGCATTCAAGTGGGTCCTCCTAATTACAGGAGTAAGTGGAATTATCATATTTTCTGCATTTGTTTGGTTTTTCAGGTACAAAAGGCTGATGCCACTTTAA 1344 41.82 MADLKERLLPPKPASAINLREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKATGVDEVWQNDANHGADLNRRRGSRNFDNVFVNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVTGYRSIDGASISAPVSPVSSPPETRRLEKSLSIARSRHESTRSSESTNENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPDAFKWVLLITGVSGIIIFSAFVWFFRYKRLMPL* 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28242018 28246132 + CsaV3_3G032740.1 Csa03g02968 523873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02968 447 Gene3D - 41 124 - -
Csa03g02968 447 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 3 447 IPR039204 -
Csa03g02968 447 Gene3D Magnesium transport protein CorA, transmembrane region 125 378 - -
Csa03g02968 447 PANTHER MAGNESIUM TRANSPORTER MRS2-10 3 447 - -
Csa03g02968 447 CDD Mrs2_Mfm1p-like 53 444 IPR039204 -
Csa03g02968 447 MobiDBLite consensus disorder prediction 293 307 - -
Csa03g02968 447 MobiDBLite consensus disorder prediction 309 329 - -
Csa03g02968 447 Gene3D Magnesium transport protein CorA, transmembrane region 385 445 - -
Csa03g02968 447 MobiDBLite consensus disorder prediction 293 329 - -
Csa03g02968 447 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 384 437 IPR045863 -
Csa03g02968 447 Pfam CorA-like Mg2+ transporter protein 328 435 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Csa03g02968 447 Coils Coil 228 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01155 Csa-Chr2:11253390 Csa03g02968 Csa-Chr3:28242018 8.37E-115 dispersed
Csa03g01926 Csa-Chr3:15039622 Csa03g02968 Csa-Chr3:28242018 2.63E-105 dispersed
Csa03g02968 Csa-Chr3:28242018 Csa06g02083 Csa-Chr6:18604466 1.45E-141 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02968 K16075 - csv:101217419 814.298