Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02976 ATGGCTGCTGGAGGGTCTGGTTCTGGGCAGCCACAATTCCTTGTGAGAGCTGGGGATGAGAGTTTTTCGCATGCTCCGTTGATCGAGAACCCAGAAACTGATCAGATTATTGTTCCTGATAAGAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGATTTCTTGTTTCTATTGCATATATTGATCCTGGGAATTTTGAGACTGATCTGCAATCTGGTGCACAGTACAAGTATGGGTTGCTTTGGATCATATTAGTGGCTTCCTTTGCTGCCCTCATCATTCAGTCTTTAGCAGCCAATCTAGGGGTTGTCACGGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCCAAGGCGCAAAATTTCATCCTCTGGGTCCTTGCTGAAATTGCAATTGTTGCATGTGATATTCCTGAAGTTATAGGAACTGCTTTTGCATTGAATATGCTCTTCAGCATTCCTGTTTGGTGTGGAGTTCTTCTGACAGGGCTTAGTACACTATTACTTCTTGCACTGCAGCAATATGGGATTAGAAAGCTTGAATTCTTGATTGCCTTTCTTGTGTTGACAATTGCGATTTGCTTCTTCCTGGAGCTGGGCTATGCAAAGCCGGATGTTGGAGAAATATTTTATGGGCTGTTTGTCCCTCAATTGAAAGGAAGTGGTGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCATTCAGCACTGGTTCTCTCTAGGAAAATACCCCGTTCCCTTTCTGGCATCAAGGAAGCTTGCAGATTTTATATGATCGAGAGTGGCTTTGCTCTTATGGTGGCCTTCCTCATTAATGTGTCAGTCATTTCAGTTAGTGGTGCAGTTTGCAATTCCCCAGATCTAAATAAGGAGGACCAAATGAGCTGCAATGACTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAACTTTTTGCTATTGCTTTGTTGGCATCGGGGCAGAGTTCTACCATAACAGGAACCTACGCAGGACAGTATGTTATGCAGGGGTTTCTCGATTTGAAACTGACGCCATGGGTCAGAAACTTTTTAACTCGAAGCTTAGCAATTGTTCCTAGTTTGATCGTTGCAATCATTGGTGGATCTTCTGGGGCTGGGAAGTTGATCATTATTGCGTCGATGATTTTGTCATTTGAACTCCCTTTTGCTCTAGTCCCCCTTTTGAAGTTTACAAGCAGCAAGGCCAAGATGGGACCGCATGTCAACTCTACTGCGATTACAGTATTGACATGGATTATTGGATTCCTCATCATGGCTATCAATATATACTACCTCATGAGCCGTTTCATCCATGTGCTCCTTCATAATGACCTCCATCTCGCAGTGGTCATCTTGATAGGAATACTTGGATTTTCAGGCGTGGCATTATATTTAGCTGGAATTGCTTACCTAGTTTTGAGAAAGACCAAGGAGATAAGTCATCTCTTAGCACTAACAGCAGAAGAAAGTCGAAGACTGAGCAACGAGCTGAGTAAGACATCGGGATATGATCTCCCAAACGAAGATGTAAGCATGCAGTTGCCTCAAAGAATTAGAACTACCAATGATGTAAACTGA 1635 42.75 MAAGGSGSGQPQFLVRAGDESFSHAPLIENPETDQIIVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYGLLWIILVASFAALIIQSLAANLGVVTGKHLAEHCKAEYPKAQNFILWVLAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLLLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAKPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSLSGIKEACRFYMIESGFALMVAFLINVSVISVSGAVCNSPDLNKEDQMSCNDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLTPWVRNFLTRSLAIVPSLIVAIIGGSSGAGKLIIIASMILSFELPFALVPLLKFTSSKAKMGPHVNSTAITVLTWIIGFLIMAINIYYLMSRFIHVLLHNDLHLAVVILIGILGFSGVALYLAGIAYLVLRKTKEISHLLALTAEESRRLSNELSKTSGYDLPNEDVSMQLPQRIRTTNDVN* 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28377168 28383176 + CsaV3_3G032820.1 Csa03g02976 523881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02976 544 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 508 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa03g02976 544 Hamap Divalent metal cation transporter MntH [mntH]. 39 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa03g02976 544 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa03g02976 544 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa03g02976 544 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa03g02976 544 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa03g02976 544 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa03g02976 544 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa03g02976 544 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa03g02976 544 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa03g02976 544 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa03g02976 544 PANTHER METAL TRANSPORTER NRAMP1 8 508 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02717 Csa-Chr2:23658728 Csa03g02976 Csa-Chr3:28377168 5.07E-109 dispersed
Csa03g02941 Csa-Chr3:28011079 Csa03g02976 Csa-Chr3:28377168 0 dispersed
Csa03g02976 Csa-Chr3:28377168 Csa06g02132 Csa-Chr6:19055175 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02976 K21398 - csv:101209649 1029.24