Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02978 ATGCCGATTGACGATACCTCTTCAGTTTCCGGCCAAATTGTGTGCGTCACCGGCGCCGGAGGCTTCATTGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAGGGATACACTGTTAGAGGAACTGTTAGAAACCCAGATGACCAAAAGAATTCTCATTTGACAAACCTACAAGGAGCTAAAGACAGGCTTTCTTTGTTTAGTGCTGACCTTCTTGATTTTGAAAGCCTTCAAGCAGCCATTACCGGTTGTCATGGCGTTTTCCACACTGCCTCTCCGGTCACCGACGATCCTGACAAGGTGGAACAAGCCATAATCGGAACAAAGAACGTCATGACCGCCGCTGCTGAAGCAAACGTTCGACGAGTGGTGTTCACGTCGTCAATCGGCACCGTCTACATGAACCCTAACCGAAGCCCAGATACGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAACACAAAGAATTGGTATTGTTATGCAAAGACAAAGGCAGAACAAGCAGCCTGGGAAGTAGCAAAAGAAAGAGGAATTGATCTTGTAGTGGTGAATCCAATGTTGGTATTGGGGCCAATGTTGCAGGAAGGAGTGAATGCAAGTGTTGTTCATATGATGAAATACTTGACAGGATCAGCAAAGACATATGTAAATGCAGTACAAGGTTATGTTGATGTTAAGGATGTTGCTAAAGCTCATGTTTTGGTCTATGAAACTCCCTCAGCCTCAGGAAGATATATTTGTGTTGAGAGTATGCTTCATCGTGGTGAATTGGTTGATATTCTTGCCCATTTCTTCCCTCAGTATCCCCTTCCCACCAAGTGTTCTGATGAGATAAATCCAAGAAAGAAACCTTACAAATACACAGTTGAGAAGCTGAGGTCATTGGGAATGGAATTCACACCAATTAAACAATGTATTTATGAAACTGTGAAGAGCCTACAAGAAAAGGGTCATCTTCCACTTCCCTCCCAACTTCAACATTAA 993 43.81 MPIDDTSSVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNSHLTNLQGAKDRLSLFSADLLDFESLQAAITGCHGVFHTASPVTDDPDKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTVYMNPNRSPDTVVDESCWSDLEFCKNTKNWYCYAKTKAEQAAWEVAKERGIDLVVVNPMLVLGPMLQEGVNASVVHMMKYLTGSAKTYVNAVQGYVDVKDVAKAHVLVYETPSASGRYICVESMLHRGELVDILAHFFPQYPLPTKCSDEINPRKKPYKYTVEKLRSLGMEFTPIKQCIYETVKSLQEKGHLPLPSQLQH* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28395056 28396980 - CsaV3_3G032840.1 Csa03g02978 523883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02978 330 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 8 325 - -
Csa03g02978 330 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 325 - -
Csa03g02978 330 Pfam NAD dependent epimerase/dehydratase family 14 244 IPR001509 -
Csa03g02978 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 317 IPR036291 -
Csa03g02978 330 Gene3D - 3 330 - -
Csa03g02978 330 CDD FR_SDR_e 14 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02978 Csa-Chr3:28395056 Csa03g02980 Csa-Chr3:28404767 0 dispersed
Csa03g02977 Csa-Chr3:28388659 Csa03g02978 Csa-Chr3:28395056 0 tandem
Csa03g02978 Csa-Chr3:28395056 Csa03g02979 Csa-Chr3:28400056 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02978 K09753 - csv:116401652 671.003