Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02979 ATGCCGATCGACACCACCGCAGTTTCCAGTGATCAAGTTGTTTGCGTCACCGGTGCCGGAGGCTTCATTGCTTCGTGGCTTGTAAAGCTTCTTCTTGAGAAGGGATACACTGTTAGGGGAACTGTTAGAAACCCAGATGACCAAAAGAATGCTCATTTGACAAACTTACAAGGAGCTAAAGACAGGCTTTCTTTGTTTAGTGCTGATCTTCTTGATTTTGAAAGCCTACAAGCAGCCATTACCGGTTGTCATGGCGTTTTCCACACCGCCTCTCCGGTCACCGACGACCCTGAAAAAGTGGAACAAGCGATAATCGGAACAAAGAACGTCATGACCGCCGCTGCTGAAGCAAATGTTCGACGAGTGGTGTTCACGTCGTCGATTGGAACTGTCTACATGAACCCTAACCGAAGCCCGGACACGGTGGTGGACGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAATACAAAGAATTGGTATTGCTATGCAAAGACAAAGGCAGAACAAGCAGCGTGGGAAGTAGCAAAAGAAAGAGGAATTGATCTTGTGGTGGTGAATCCAATGTTGGTATTGGGGCCAATGTTGCAGGAAGGAGTGAATGCAAGTGTTGTTCATATGATGAAATACTTGACAGGATCAGCAAAGACATATGTAAATGCAGTACAAGGTTATGTTGATGTTAAAGATGTTGCTAAAGCTCATGTTTTGGTCTATGAAACTCCCTCAGCCTCAGGAAGATATATTTGTGTTGAGAGTATGCTTCATCGTGGTGAATTGGTTGACATTCTTGCCCATTTCTTCCCTCAGTATCCCCTTCCCACCAAGTGTTCTGATGAGGTAAATCCAAGAAAGAAACCTTACAAATACACAGTTGAGAAGCTGATGTCATTGGGAATGGAATTCACACCAATTAAACAATGTATTTATGAAACTGTGAAGAGCCTACAAGAAAAGGGTCATCTTCCACTTCCTTCCCAACTTCAACGGTGA 993 44.21 MPIDTTAVSSDQVVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLTNLQGAKDRLSLFSADLLDFESLQAAITGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTVYMNPNRSPDTVVDESCWSDLEFCKNTKNWYCYAKTKAEQAAWEVAKERGIDLVVVNPMLVLGPMLQEGVNASVVHMMKYLTGSAKTYVNAVQGYVDVKDVAKAHVLVYETPSASGRYICVESMLHRGELVDILAHFFPQYPLPTKCSDEVNPRKKPYKYTVEKLMSLGMEFTPIKQCIYETVKSLQEKGHLPLPSQLQR* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28400056 28401839 - CsaV3_3G032850.1 Csa03g02979 523884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02979 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 317 IPR036291 -
Csa03g02979 330 Pfam NAD dependent epimerase/dehydratase family 14 244 IPR001509 -
Csa03g02979 330 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 325 - -
Csa03g02979 330 Gene3D - 4 330 - -
Csa03g02979 330 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 8 325 - -
Csa03g02979 330 CDD FR_SDR_e 14 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02554 Csa-Chr1:22473929 Csa03g02979 Csa-Chr3:28400056 2.53E-97 dispersed
Csa03g02977 Csa-Chr3:28388659 Csa03g02979 Csa-Chr3:28400056 0 dispersed
Csa03g02979 Csa-Chr3:28400056 Csa07g02102 Csa-Chr7:20253590 0 dispersed
Csa03g03943 Csa-Chr3:34496604 Csa03g02979 Csa-Chr3:28400056 2.07E-41 dispersed
Csa05g01914 Csa-Chr5:22297998 Csa03g02979 Csa-Chr3:28400056 3.51E-38 dispersed
Csa03g02978 Csa-Chr3:28395056 Csa03g02979 Csa-Chr3:28400056 0 tandem
Csa03g02979 Csa-Chr3:28400056 Csa03g02980 Csa-Chr3:28404767 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02979 K09753 - csv:101218838 669.077