Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g02979 | ATGCCGATCGACACCACCGCAGTTTCCAGTGATCAAGTTGTTTGCGTCACCGGTGCCGGAGGCTTCATTGCTTCGTGGCTTGTAAAGCTTCTTCTTGAGAAGGGATACACTGTTAGGGGAACTGTTAGAAACCCAGATGACCAAAAGAATGCTCATTTGACAAACTTACAAGGAGCTAAAGACAGGCTTTCTTTGTTTAGTGCTGATCTTCTTGATTTTGAAAGCCTACAAGCAGCCATTACCGGTTGTCATGGCGTTTTCCACACCGCCTCTCCGGTCACCGACGACCCTGAAAAAGTGGAACAAGCGATAATCGGAACAAAGAACGTCATGACCGCCGCTGCTGAAGCAAATGTTCGACGAGTGGTGTTCACGTCGTCGATTGGAACTGTCTACATGAACCCTAACCGAAGCCCGGACACGGTGGTGGACGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAATACAAAGAATTGGTATTGCTATGCAAAGACAAAGGCAGAACAAGCAGCGTGGGAAGTAGCAAAAGAAAGAGGAATTGATCTTGTGGTGGTGAATCCAATGTTGGTATTGGGGCCAATGTTGCAGGAAGGAGTGAATGCAAGTGTTGTTCATATGATGAAATACTTGACAGGATCAGCAAAGACATATGTAAATGCAGTACAAGGTTATGTTGATGTTAAAGATGTTGCTAAAGCTCATGTTTTGGTCTATGAAACTCCCTCAGCCTCAGGAAGATATATTTGTGTTGAGAGTATGCTTCATCGTGGTGAATTGGTTGACATTCTTGCCCATTTCTTCCCTCAGTATCCCCTTCCCACCAAGTGTTCTGATGAGGTAAATCCAAGAAAGAAACCTTACAAATACACAGTTGAGAAGCTGATGTCATTGGGAATGGAATTCACACCAATTAAACAATGTATTTATGAAACTGTGAAGAGCCTACAAGAAAAGGGTCATCTTCCACTTCCTTCCCAACTTCAACGGTGA | 993 | 44.21 | MPIDTTAVSSDQVVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLTNLQGAKDRLSLFSADLLDFESLQAAITGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTVYMNPNRSPDTVVDESCWSDLEFCKNTKNWYCYAKTKAEQAAWEVAKERGIDLVVVNPMLVLGPMLQEGVNASVVHMMKYLTGSAKTYVNAVQGYVDVKDVAKAHVLVYETPSASGRYICVESMLHRGELVDILAHFFPQYPLPTKCSDEVNPRKKPYKYTVEKLMSLGMEFTPIKQCIYETVKSLQEKGHLPLPSQLQR* | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 28400056 | 28401839 | - | CsaV3_3G032850.1 | Csa03g02979 | 523884 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g02979 | 330 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 8 | 317 | IPR036291 | - | |
Csa03g02979 | 330 | Pfam | NAD dependent epimerase/dehydratase family | 14 | 244 | IPR001509 | - | |
Csa03g02979 | 330 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 8 | 325 | - | - | |
Csa03g02979 | 330 | Gene3D | - | 4 | 330 | - | - | |
Csa03g02979 | 330 | PANTHER | CINNAMOYL-COA REDUCTASE-LIKE PROTEIN | 8 | 325 | - | - | |
Csa03g02979 | 330 | CDD | FR_SDR_e | 14 | 299 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02554 | Csa-Chr1:22473929 | Csa03g02979 | Csa-Chr3:28400056 | 2.53E-97 | dispersed | |
Csa03g02977 | Csa-Chr3:28388659 | Csa03g02979 | Csa-Chr3:28400056 | 0 | dispersed | |
Csa03g02979 | Csa-Chr3:28400056 | Csa07g02102 | Csa-Chr7:20253590 | 0 | dispersed | |
Csa03g03943 | Csa-Chr3:34496604 | Csa03g02979 | Csa-Chr3:28400056 | 2.07E-41 | dispersed | |
Csa05g01914 | Csa-Chr5:22297998 | Csa03g02979 | Csa-Chr3:28400056 | 3.51E-38 | dispersed | |
Csa03g02978 | Csa-Chr3:28395056 | Csa03g02979 | Csa-Chr3:28400056 | 0 | tandem | |
Csa03g02979 | Csa-Chr3:28400056 | Csa03g02980 | Csa-Chr3:28404767 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g02979 | K09753 | - | csv:101218838 | 669.077 |