Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02980 ATGCCCCTCGCTGCCCCTGTAGCTTCCGGTCAAACTGTTTGTGTCACCGGCGCCGGTGGCTTCATTGCCTCTTGGCTTGTCGAGCTTCTTCTTCAAAAGGGTTACATTGTCAGAGGCACGGTGAGAAATCCAGATGATCGGAAAAATGATCATTTGAAAGAGCTGGATGGAGCTGAGCAAAGGTTGACGTTGTACGGTGCTGATCTTCTTGATTTTGAGAGCCTTAAAGCCGCCGTTAATGGTTGCGATGGTGTTTTCCACACGGCGTCTCCGGTGACCGATGACCCAGAAAAGGTGGAGCAGGCAATATTTGGGACAAAAAATGTTATAATGGCGGCGGCCGAGGCCAAGGTCCGGCGAGTGGTGTTCACATCATCCATTGGAACTATATACATGAACCCCAATCGGAGCCCCGACACGGTGGTGGATGAGTCTTGTTGGAGTGATCTCGAGTATTGCAAAAATACTAAGAATTGGTATTGTTATGCAAAAACAGTGGCAGAGCAAACAGCATGGGCAACGGCAAAGGAGAAAGGGGTGGATCTAGTTGTGGTGAATCCCATGTTGGTGCTTGGACCATTATTACAACAGTCAATAAATGCAAGTGTTGCTCATATCATGAAGTACTTGACTGGCTCTGTCAAGACTTATGTCAATGCAGTTCAAGGGTATGTTCATGTCAAGGATGTTGCAAAAGCTCACTTGTTGGTGTATGAGACTCCCTCTGCCTTCGGTAGATACATTTGTGCTGAAACTATGCTTCATCGAGGAGAATTAGTTGACATTTTGGCTAAGTTCTTCCCTGAGTATCCCATTCCTACCAAGTGCTCTGACCAGGTGAACCCTAAGAAGAAACCTTACAAATATAGTGTGAAAAAGCTGAAGGACTTAGGCATGGAGTTCATACCTGTGAAGCAATGCATATATGAAACTGTGAAGAGCCTTCAAGAGAAGGGTCATCTTCCACTTCCTGCTTAA 978 46.22 MPLAAPVASGQTVCVTGAGGFIASWLVELLLQKGYIVRGTVRNPDDRKNDHLKELDGAEQRLTLYGADLLDFESLKAAVNGCDGVFHTASPVTDDPEKVEQAIFGTKNVIMAAAEAKVRRVVFTSSIGTIYMNPNRSPDTVVDESCWSDLEYCKNTKNWYCYAKTVAEQTAWATAKEKGVDLVVVNPMLVLGPLLQQSINASVAHIMKYLTGSVKTYVNAVQGYVHVKDVAKAHLLVYETPSAFGRYICAETMLHRGELVDILAKFFPEYPIPTKCSDQVNPKKKPYKYSVKKLKDLGMEFIPVKQCIYETVKSLQEKGHLPLPA* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28404767 28409537 - CsaV3_3G032860.1 Csa03g02980 523885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02980 325 CDD FR_SDR_e 13 298 - -
Csa03g02980 325 Gene3D - 5 325 - -
Csa03g02980 325 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 322 - -
Csa03g02980 325 Pfam NAD dependent epimerase/dehydratase family 13 242 IPR001509 -
Csa03g02980 325 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 7 322 - -
Csa03g02980 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 316 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00681 Csa-Chr3:6027368 Csa03g02980 Csa-Chr3:28404767 2.43E-64 dispersed
Csa03g02978 Csa-Chr3:28395056 Csa03g02980 Csa-Chr3:28404767 0 dispersed
Csa03g02980 Csa-Chr3:28404767 Csa07g02102 Csa-Chr7:20253590 0 dispersed
Csa03g02979 Csa-Chr3:28400056 Csa03g02980 Csa-Chr3:28404767 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02980 K09753 - csv:101219069 654.055