Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa03g02982 | ATGGCTCCAGAAACTCCCGACAGCCACTCCAGGAATCCTCCTTCCACGCCTGATTCCCCCACCACCTCCGCTGGTTTCGAAACAGATCAGCTTCCTCATCTCAGCCAAACTTCCGACAACTACCTCGATGAGGACGAAGCCGCCGTCGATCCTCATATCCTTCCCGACGAGCCTGACCCCGATGAAGAGGAGGAAGGAGAGGATCTCTACCACGACAATTTCTTGGACGATTACCGACGGATGGACGAGCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCGTTAGAGGATGAGAGGGATTTGGTTCAGATTATGAAAGACCGACAAGCTGCCGAGATAGAACTGGAAAATCGCGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAACTCTTACATGATCATGACTCTGAGGACGACAACTACAGGCCTTCAAAAAGATCAAGAGCTGATTTTCGGCCTCCAGCTGGTGGAAGAGGCTATGATGACATTGATGGTATGCAAAGTTCTCCGGGTAGATCACAGAGGGAAAACTCGCGAGATGATGTGCCCATGACAGATCAATCTGTTGATGACCAATATGAGGACGAAGATGATGATGAGAATGAGAATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAACATGTTACCATGGATGCGGTTCGGCGCTTTATAGGCAAAAAATTTAAGAAATTCTTGGAAACATATGTGAATCCAAAGAGTGGAAATGGTGAGCTTGAGTACATGCGATTGATAAATGAGATGGTGTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAACAGTTCATCTTTGTTCATCCAAATATAGCAATCTGGTTGGCTGATGCACCCCAGCCCGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTCTTTGACATACATCCAAACTACAAAAATATCCACCAAAAGATCTACGTCCGGATCAATAATTTACCAGTCTATGATCAGATTCGAAATATAAGGCAAATTCATTTAAATACCATGATTCGTATTGGGGGTGTAGTGACCCGACGCTCTGGTGTCTTTCCCCAGTTGCAGCAGGTGAAGTATGATTGTAATAAGTGTGGCACAATACTGGGACCTTTTTTTCAGAATTCTTATTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAATCGAAAGGGCCATTCACTGTAAATGTTGAGCAGACTGTATATAGGAATTATCAAAAGCTAACCCTCCAAGAAAGCCCAGGAATTGTGCCAGCTGGTCGACTTCCTAGGTACAAGGAAGTGATACTATTGAATGATCTAATTGACTGTGCTCGTCCTGGAGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTATCATTGAATACAAAGAACGGTTTTCCTGTATTTTCCACTGTTGTTGAAGCAAATTATATTACCAAGAAGCAAGATCTTTTTTCTGCTTACAAGATTACCCAGGAAGATAAGGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAGTCCATTGCACCATCAATCTATGGTCACGAGGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTCGAAGGGAAACATCGATTGCGAGGCGATATCAATGTTCTTTTATTAGGTGATCCTGGCACAGCCAAATCACAATTTCTTAAGTATGTTGAGAAAACTGGACATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCTGTAGGACTGACAGCAGCAGTGCATAAGGATCCTGTCACAAGGGAATGGACTCTTGAAGGAGGTGCCCTTGTATTAGCCGACAGAGGAATTTGTCTTATTGATGAATTTGACAAAATGAACGATCAGGACAGGGTGAGTATCCACGAGGCAATGGAGCAGCAGAGCATCAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCGGTCATTTCTGCTGCCAATCCAATCGGAGGAAGGTACGACTCCTCAAAAACATTTTCACAAAATGTTGAGCTGACCGATCCTATCATTTCTCGATTTGACATCCTCTGTGTTGTTAAGGATGTGGTAGACTCTGTAGCAGACGAGATGCTTGCTACGTTTGTGGTTGACAGTCATTTCAAATCACAGCCAAAGGGAGCCAATCTTGATGACAAGTCTATAAACGAATCTCAGGAGGACAGTCAAGACTCAGCAAGGCCACTGGATCCGGAGGTGCTCCCCCAAGATCTGTTGAGGAAGTACATAACTTATTCCAAGTTGAATGTTTTTCCAAGGTTGCATGATGCTGATTTGGATAAGTTAACTCATGTCTATGCAGAATTACGAAGGGAATCTTCTCATGGGCAAGGAGTTCCCATTGCAGTTAGGCACATCGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGACAGCACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTTTTACTTGATTCCTTCATTTCGACCCAGAAATTTGGGGTGCAGAAAGCTCTGCAGAAGAGCTTCAGAAAGTATATGACTTTCAAGAAGGATTACAATGAACTGTTGCTATATCTTCTCCGAGAGCTTGTGAAGAATGCAATTCACTTCGAGGAAATTGTTCGTGGATCCACATCAGAGCTTACCCAAATCAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAAGAGCATGAAATTTATGATCTGAAACCATTCTTCAACAGCTCTCATTTTTCAAATGCTAATTTTGTGCTGGATGAAGAGCATGGACTAATCAGGCATAACCTTGCCAGATGA | 2835 | 43.28 | MAPETPDSHSRNPPSTPDSPTTSAGFETDQLPHLSQTSDNYLDEDEAAVDPHILPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLGLDDSLEDERDLVQIMKDRQAAEIELENRDAQFTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAGGRGYDDIDGMQSSPGRSQRENSRDDVPMTDQSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTVYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKITQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVISAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVADEMLATFVVDSHFKSQPKGANLDDKSINESQEDSQDSARPLDPEVLPQDLLRKYITYSKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNAIHFEEIVRGSTSELTQINVKLEDLQSKAQEHEIYDLKPFFNSSHFSNANFVLDEEHGLIRHNLAR* | 945 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 28424382 | 28433685 | + | CsaV3_3G032880.1 | Csa03g02982 | 523887 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa03g02982 | 944 | ProSitePatterns | MCM family signature. | 616 | 624 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Csa03g02982 | 944 | ProSiteProfiles | MCM family domain profile. | 507 | 713 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa03g02982 | 944 | MobiDBLite | consensus disorder prediction | 188 | 203 | - | - | |
| Csa03g02982 | 944 | CDD | MCM2 | 510 | 837 | - | - | |
| Csa03g02982 | 944 | Gene3D | - | 328 | 453 | IPR012340 | - | |
| Csa03g02982 | 944 | MobiDBLite | consensus disorder prediction | 8 | 42 | - | - | |
| Csa03g02982 | 944 | Pfam | MCM AAA-lid domain | 754 | 838 | IPR041562 | - | |
| Csa03g02982 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 337 | 354 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Csa03g02982 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 360 | 372 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Csa03g02982 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 395 | 409 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Csa03g02982 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 456 | 467 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Csa03g02982 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 471 | 482 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Csa03g02982 | 944 | Gene3D | - | 220 | 324 | - | - | |
| Csa03g02982 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 548 | 563 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa03g02982 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 608 | 622 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa03g02982 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 636 | 649 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa03g02982 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 660 | 672 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa03g02982 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 687 | 695 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa03g02982 | 944 | Pfam | MCM N-terminal domain | 228 | 321 | IPR027925 | - | |
| Csa03g02982 | 944 | MobiDBLite | consensus disorder prediction | 722 | 747 | - | - | |
| Csa03g02982 | 944 | Pfam | MCM P-loop domain | 495 | 717 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa03g02982 | 944 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Csa03g02982 | 944 | Gene3D | - | 355 | 405 | - | - | |
| Csa03g02982 | 944 | MobiDBLite | consensus disorder prediction | 730 | 744 | - | - | |
| Csa03g02982 | 944 | MobiDBLite | consensus disorder prediction | 116 | 158 | - | - | |
| Csa03g02982 | 944 | Pfam | MCM OB domain | 327 | 454 | IPR033762 | - | |
| Csa03g02982 | 944 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 517 | 841 | IPR027417 | - | |
| Csa03g02982 | 944 | SUPERFAMILY | Nucleic acid-binding proteins | 229 | 476 | IPR012340 | - | |
| Csa03g02982 | 944 | SMART | mcm | 324 | 839 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa03g02982 | 944 | MobiDBLite | consensus disorder prediction | 116 | 203 | - | - | |
| Csa03g02982 | 944 | PANTHER | DNA HELICASE | 144 | 937 | - | - | |
| Csa03g02982 | 944 | Pfam | Mini-chromosome maintenance protein 2 | 44 | 199 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Csa03g02982 | 944 | Gene3D | - | 487 | 861 | IPR027417 | - | |
| Csa03g02982 | 944 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 144 | 937 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa02g00251 | Csa-Chr2:1704263 | Csa03g02982 | Csa-Chr3:28424382 | 1.56E-106 | dispersed | |
| Csa03g02982 | Csa-Chr3:28424382 | Csa07g00021 | Csa-Chr7:360064 | 1.18E-102 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa03g02982 | K02540 | - | csv:101219546 | 1816.59 |