Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02986 ATGTCTCCTGTGGAAACGCTGCTACTTTTCGCATTCTTCTACGCTGGAATAGACACAGCCGGTTCTTTTACTGATCCCCGCGATTCTGCTGCGCTGGAATCCTTGAGAAATGAATGGCAAAATACACCACCAAGCTGGGGAGCATCGATTGATCCTTGTGGAACTCCTTGGGAAGGAGTGGCTTGCATTAATTCAAGAGTCACTGCACTGAGATTATCAACTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTGACCGAACTAAAATCATTGGACCTTTCGTTCAATAAAGACCTCACTGGTTCAATCTCTCCAGCATTAGGGGATCTACAGAATTTGAGTATCTTGATCCTAGCTGGTTGTGGCTTCAGTGGCAGTATTCCCGAACAACTGGGCAATCTTTCTAATCTATCCTTCTTGGCTTTAAACTCTAACAACTTTACTGGTACCATACCGCCATCTCTGGGAAAACTCTCCAATCTCTATTGGCTGGACCTGGCTGATAATCAATTGACAGGTAGTCTTCCAGTCTCGACTTCTGAAACTCCTGGTTTGGACCTCCTTCTAAAGGCTAAACACTTTCATTTCAACAAAAACCAGTTGTCAGGTTCCATTTCACCTAAACTTTTTAGGTCTGAAATGGTATTAATACACATATTGTTTGATGGAAATAAATTTTCTGGGAATATCCCACCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGGAATTCCCTGGCAGGAACTGTCCCATCAAATCTGAACAACCTAACAAATATCAATGAATTGAATTTAGCCAACAATAAGTTGACGGGTCCACTGCCAAACTTAACTCAAATGAGCTCACTAAATTATGTGGACCTTAGTAACAATTCATTTGATTCATCAGAAGCTCCCGAATGGTTCTCAAATCTACAATCTCTCACGACTCTGATCATTGAATTTGGTTCAATGCGAGGATCTGTTCCACAAGGAGTATTTAGTTTACCACAAATACAACAAGTGAAACTGAAGAAGAATGCATTCAGTGACACATTTGATATGGGTGACAAAGTCAGTGAACAGTTGCAGCTCGTTGATTTGCAAAATAACAACATTTCCCATTTTACTCTTGGTTCAAGATATACCAAAACTTTGATGCTTATAGGGAATCCTGTGTGTAGCACTGATGTTACCCTCTCAAATACGAACTACTGCCAAGTTCAAGATCAACCGGTGAAACCCTATTCTACCAGCCTTGCCAGCTGTTTAAGTAAGTCATGTTCTCCGGATGAGAAGTTAAGTCCTCAAAGTTGTGAATGTACCTATCCATTTGAAGGGACTTTGTACTTTAGAGCACCCTCATTTAGGGATTTGTCCAATGTGACTTTGTTTCATTCATTGGAATTTAGCCTTTGGAAAAAACTGGACCTTACGCCTGGTTCAGTTTCTATTCAAAACCCGTTCTTCAATGTTGACGATTATCTTCAGATGCAACTTGCACTTTTTCCGTCCGATGGTAAGTATTTTAACAGGTCAGAGATTCAGAGGATTGGATTTTACTTGAGCAATCAAACCTACAAACCTCCCCATGAATTTGGGCCATTTTATTTCATTGCTTCTCCCTACGGTTTTGCAGACACAACTAAGGGAACTTCAATCAGCCCCGGAGTGATAATTGGGGTAGCTATTGGTTGTGCCTTCCTCGTTCTAGGCCTCATTGGAGTTGGAATATATGCAATTTGGCAAAAGAAACGTGCAGAAAAGGCCATTGGGTTGAGTCGGCCATTTGCTTCTTGGGCACCAAGTGGCAATGATAGTGGAGGTGCACCACAGTTGAAGGGAGCCCGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCATGAGCAATGAGGTAGGATCGGGAGGATATGGCAAGGTGTATAGAGGGATGCTTGTGGATGGACAAGCAGTTGCGATCAAAAGAGCTCAGCAAGGATCAATGCAGGGTGGCCTTGAGTTTAAAACGGAAATCGAACTGCTTTCACGAGTTCATCACAAAAACCTCCTTGGCCTGGTGGGATTTTGTTTTGAACAAGGAGAACAGATGCTCGTTTATGAATTTATGCCTAATGGAACACTGAGAGATAGCCTGTCTGGAAAATCTGGTATCAATCTTGATTGGAAGAGAAGACTTCGTATTGCTCTTGGATCTGCGAGAGGATTGGCTTACTTACATGAACTTGCCAATCCTCCCATAATCCATAGGGACGTTAAGTCCACCAATATTCTATTAGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCTGACAATGAAAAGGGACACGTTTCTACTCAAGTTAAAGGAACATTGGGTTATTTGGATCCTGAGTATTACATGACTCAACAGTTAACAGAGAAAAGTGATGTATATAGCTTTGGAGTCGTTATGTTGGAACTATTAACAGGTAAGTTGCCTATCGAGAAAGGAAAGTATGTAGTTCGTGAGGTGCGCATGTTGATGAATAAAAGTGAGGAAGAATATTATGGTCTCAAGCAGATAATGGATGTAACCATTTTAAACAATACAACGACCATTATTGGGCTTGGAAGGTTCTTGGAGTTGGCCATGCGATGCGTGGAGGAGTCAGCTGGAGATCGTCCCACAATGAGTGAAATGGTCAAGGCAATTGAGAGTATTTTGCAGAATGATGGTATTAATACGAACACAACATCTGCATCCTCGTCTGCAACTGACTTTGGGGCTTCCAGAAACGCTCCTAGGCATCCCTACAATGATCCTATACCAAAAAAGGATGCCCATGACAGCAATTCTTTTGATTACAGTGGTGGATACACTCTTTCAACAAAAGTGGAGCCCAAATAG 2901 41.68 MSPVETLLLFAFFYAGIDTAGSFTDPRDSAALESLRNEWQNTPPSWGASIDPCGTPWEGVACINSRVTALRLSTMGLKGKLGGDIGGLTELKSLDLSFNKDLTGSISPALGDLQNLSILILAGCGFSGSIPEQLGNLSNLSFLALNSNNFTGTIPPSLGKLSNLYWLDLADNQLTGSLPVSTSETPGLDLLLKAKHFHFNKNQLSGSISPKLFRSEMVLIHILFDGNKFSGNIPPTLGLVKTLEVLRLDRNSLAGTVPSNLNNLTNINELNLANNKLTGPLPNLTQMSSLNYVDLSNNSFDSSEAPEWFSNLQSLTTLIIEFGSMRGSVPQGVFSLPQIQQVKLKKNAFSDTFDMGDKVSEQLQLVDLQNNNISHFTLGSRYTKTLMLIGNPVCSTDVTLSNTNYCQVQDQPVKPYSTSLASCLSKSCSPDEKLSPQSCECTYPFEGTLYFRAPSFRDLSNVTLFHSLEFSLWKKLDLTPGSVSIQNPFFNVDDYLQMQLALFPSDGKYFNRSEIQRIGFYLSNQTYKPPHEFGPFYFIASPYGFADTTKGTSISPGVIIGVAIGCAFLVLGLIGVGIYAIWQKKRAEKAIGLSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSMSNEVGSGGYGKVYRGMLVDGQAVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGTLRDSLSGKSGINLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSTNILLDEHLNAKVADFGLSKLVSDNEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELLTGKLPIEKGKYVVREVRMLMNKSEEEYYGLKQIMDVTILNNTTTIIGLGRFLELAMRCVEESAGDRPTMSEMVKAIESILQNDGINTNTTSASSSATDFGASRNAPRHPYNDPIPKKDAHDSNSFDYSGGYTLSTKVEPK* 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28466318 28474642 - CsaV3_3G032920.1 Csa03g02986 523891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02986 966 Gene3D Ribonuclease Inhibitor 25 218 IPR032675 -
Csa03g02986 966 Gene3D Phosphorylase Kinase; domain 1 605 706 - -
Csa03g02986 966 ProSitePatterns Protein kinases ATP-binding region signature. 637 659 IPR017441 GO:0005524
Csa03g02986 966 Gene3D Ribonuclease Inhibitor 284 420 IPR032675 -
Csa03g02986 966 ProSiteProfiles Protein kinase domain profile. 631 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02986 966 SUPERFAMILY L domain-like 31 408 - -
Csa03g02986 966 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 938 - -
Csa03g02986 966 Pfam Protein tyrosine and serine/threonine kinase 633 901 IPR001245 GO:0004672|GO:0006468
Csa03g02986 966 MobiDBLite consensus disorder prediction 910 966 - -
Csa03g02986 966 Gene3D Transferase(Phosphotransferase) domain 1 707 929 - -
Csa03g02986 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672|GO:0006468
Csa03g02986 966 CDD STKc_IRAK 637 905 - -
Csa03g02986 966 MobiDBLite consensus disorder prediction 910 927 - -
Csa03g02986 966 SUPERFAMILY Protein kinase-like (PK-like) 616 914 IPR011009 -
Csa03g02986 966 PANTHER LRR RECEPTOR-LIKE KINASE 1 938 - -
Csa03g02986 966 SMART serkin_6 631 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02986 966 Gene3D Ribonuclease Inhibitor 219 283 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02986 Csa-Chr3:28466318 Csa03g04035 Csa-Chr3:35225433 0 dispersed
Csa06g01446 Csa-Chr6:12308600 Csa03g02986 Csa-Chr3:28466318 5.77E-77 dispersed
Csa03g02986 Csa-Chr3:28466318 Csa06g03067 Csa-Chr6:26338997 3.11E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78025 PF07714 PK_Tyr_Ser-Thr 1.10E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02986 - - csv:101220026 1876.68