Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02987 ATGGGCAACTGCGGTACTAGAGAAGAGTCTGCGGTCGTTTCCAATGCTCAAGTTCAACAGCTGCATACTTCGTCTTCCTTGGCTGTGAAAAACGCCAACAACAATGCTACAGATAAAAGGCATATTCATAACCGGTCCATATCAGATCTAAGCGATCCTTCAACACCTCGCAACCTCGAGGACTTCAGAAAGAATTCGGTGCTCTACACACATGTCATCGCCTTCACATTATACGAGCTGGAAACGATCACCAAGAGTTTCCGATCCGATTACATTCTCGGAGAAGGCGGTTTTGGAACTGTTTACAAAGGCTACATTGATGAGAACGTCAGGGTTGGCCTCAAATCTCTTCCTGTCGCTGTCAAGGTTCTCAACAAGGAAGGGCTACAGGGCCACCGAGAATGGCTTACAGAAGTCAACTTTCTTGGTCAGCTAAGACATCCAAACCTTGTCAAGTTGATTGGTTACTGCTGCGAGGATGATCACAGATTACTTGTCTACGAGTTCATGTTTAGAGGAAGCCTAGAAAACCACCTCTTTCGAAAGACAACTGTTCCGTTGCCATGGGCAAGAAGAATGATGATAGCTCTTGGAGCGGCCAAGGGACTTGCTTTCCTTCATAATGCTGAACGGCCTGTTATCTATCGGGATTTTAAAACCTCTAATATACTATTGGACTCTGACTATACAGCTAAGCTTTCTGATTTTGGGCTTGCAAAAGCTGGACCACAAGGTGATGAGACGCATGTTTCTACTCGAGTAATGGGTACTTATGGTTATGCTGCCCCCGAATATGTCATGACTGGGCACTTGACAGCAAGAAGTGATGTATACAGCTTTGGTGTTGTTCTTCTGGAGCTTTTGACGGGAAGAAAGTCTGTTGACAAAACAAAACCAAGCAAGGAGCAGAATTTGGTAGACTGGGCCCGACCTAAACTAAATGACAAGAGAAAGTTGCTTCAAATAATTGACCCTCGATTGGAAAGTCAATACTCGATTAGGGCAGCACAGAAGGCCTGCAGCCTAGCGTACTATTGTCTGAGCCAGAATCCGAAAGCAAGACCATTAATGAGTGATGTAGTTGAAACTCTGGAACCATTGCAGAGCGGTAACGATGCAATTGAATATTCATCAATGGGAAATACTCCATTTGTTAGGGGGGGTGTCCCTGATTACAGGATGCGACAGAGGTTTATCAACAATGTTGGTTCAGGGGCTAGTTGTCGGTCTCCTAACCCCAATTGTTCCCCCAACGGCCCCGCTGCTTGTAGGGTTAGATGA 1281 45.59 MGNCGTREESAVVSNAQVQQLHTSSSLAVKNANNNATDKRHIHNRSISDLSDPSTPRNLEDFRKNSVLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKTTVPLPWARRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTKPSKEQNLVDWARPKLNDKRKLLQIIDPRLESQYSIRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSGNDAIEYSSMGNTPFVRGGVPDYRMRQRFINNVGSGASCRSPNPNCSPNGPAACRVR* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28476356 28489394 - CsaV3_3G032930.1 Csa03g02987 523892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02987 426 ProSitePatterns Protein kinases ATP-binding region signature. 93 122 IPR017441 GO:0005524
Csa03g02987 426 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL8-RELATED 28 413 - -
Csa03g02987 426 CDD STKc_IRAK 93 367 - -
Csa03g02987 426 MobiDBLite consensus disorder prediction 24 55 - -
Csa03g02987 426 SUPERFAMILY Protein kinase-like (PK-like) 62 365 IPR011009 -
Csa03g02987 426 PANTHER OS01G0588500 PROTEIN-RELATED 28 413 - -
Csa03g02987 426 Pfam Protein tyrosine and serine/threonine kinase 92 364 IPR001245 GO:0004672|GO:0006468
Csa03g02987 426 ProSiteProfiles Protein kinase domain profile. 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02987 426 Gene3D Phosphorylase Kinase; domain 1 52 169 - -
Csa03g02987 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Csa03g02987 426 Gene3D Transferase(Phosphotransferase) domain 1 170 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02993 Csa-Chr1:26155947 Csa03g02987 Csa-Chr3:28476356 2.82E-155 dispersed
Csa01g03041 Csa-Chr1:26493868 Csa03g02987 Csa-Chr3:28476356 3.62E-160 dispersed
Csa02g00705 Csa-Chr2:5689115 Csa03g02987 Csa-Chr3:28476356 6.16E-163 dispersed
Csa03g02987 Csa-Chr3:28476356 Csa05g02420 Csa-Chr5:26216079 1.09E-151 dispersed
Csa04g02586 Csa-Chr4:25400824 Csa03g02987 Csa-Chr3:28476356 1.71E-133 dispersed
Csa07g02351 Csa-Chr7:21752592 Csa03g02987 Csa-Chr3:28476356 1.29E-134 dispersed
Csa03g02987 Csa-Chr3:28476356 Csa02g00015 Csa-Chr2:233723 1.21E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78026 PF00069 Pkinase 7.30E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02987 - - csv:101220268 863.218