Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02997 ATGCTTTTCAAACTATTCCTTATTCTTGTCTTAGCTGCTGCCGGCGTTTCTGCTGTAGACACTGCTTTCAATGATGACGTTCTAGGATTGATAGTGTTCAAAGCTGGTCTTCAGGATCCCATGGGTAAACTGGTCACATGGAACGAAGACGACGAAACACCCTGTAACTGGTTTGGTGTCAAATGCAATCCTAAAACCAATAGGGTCTCTGAACTTGTCCTTGATGGATTTTCTTTGTCTGGTCACATCGGTCGTGGACTCTTGAGGTTGCAATTCCTTCAAATACTTTCACTTGCCAACAACAACTTCACTGGCACAATCAACTCTGCTCTTTCTCACCTTGGAAATTTGCAAGTTATTGACTTGAGTGACAACAGTTTATCTGGACCCATTCCTGAACAACTTTTCCTGCAATGTGGGTCTATAAGAGTTCTTTCATTTGCCAGAAACAACCTCATAGGAAATATCCCTCAATCATTAACCTCTTGCTTCTCTCTGGAGCTTCTCAACTTCTCCTCCAACCACCTCTCTGGAACATTGCCCTCTGGGTTATGGTATTTGAGAGAGCTCCAGTCTCTGGATTTGTCTGACAACTTGCTTGAGGGGCAAATTCCTACTGGAATTCAAAATTTGTACGATTTGAGATTTGTTAGTTTACACAAGAATCGATTATCTGGAAAGCTTCCTGAGGATATTGGTGGCTGCTTGCTTCTAAAATCACTCGATTTTAGTGAGAATATCCTTTCTGGGGGTCTTCCAGAGTCGATGCAGATGCTCAGTTCTTGCACTTACCTGAATTTACGTGGAAATTTTCTCACGGGTGAAGTCCCTCGTTGGATTGGGGAACTTAAAAATCTTGACACTTTAGATCTTTCTGCTAATAACTTTTCTGGTCAGCTGCCAAGTTCAATTGGCAACCTCCAATTCTTGAAGAAGTTTAATGTGTCCACAAACTATTTAACTAGAAACTTGCCAGAATCCATGGAAAATTGTAATAACCTCTTGAGTATTGATGCTAGCCATAATCGTTTGACTGGCAATCTCCCTATATGGATCTTTAAGGCAGCTATGCCAAGTGTTCCATTTTCCTCGTACAGGTTGGAAGAAAACCTTTCATCTCCAGCCTCTTTCCAGGGTCTTCAAGTTTTGGATTTATCTTCAAATATTTTCTCTGGTCACATTCCATCTAATGTTGGAGAACTTGGTAACTTGCAGTTACTTAACATATCTAGAAACCATCTCGTGGGTTCTATTCCAAGGAGCATTGGTGAACTAAAATCAGCATACGCACTTGACTTCAGTGACAATCAATTAAGCGGAAGCATTCCTGCTGAAATTGGGGGAGCGATCTCACTCAAGGAGTTAAGGCTGGAGAAGAACTTCCTCACTGGGGAAATCCCAGTCAAGATTGGCAAATGCCCGTTGTTAACATCATTACAGTGGACTTCTCATAATTTACCAGTTGAGTTTCAAATTAGGACCAATGTGTGCAAGATTCTTTCTCACAACAACCTCACAGGCTCAATTCCTGCTGCCGTTGCAAATCTTTCCAATCTTGTAGATGTAGACTTGTCTTTCAACAAACTATCCGGAAGCCTGCCCAAGGAGCTGACTAATCTTTCCCACCTCCTCTCCTTTAATATCTCCCACAATCACCTTGAGGGAGAACTGCCAGTTGGTGGCTTCTTCAACGCTATATCTCCCTTGTCCATATCACATAACCCATCTCTTTGTGGCGCTGTTGTCAATAGGTCATGTCCATCCGTCCATCCAAAACCGATCGTCCTAAACCCAAATTCTTCTGATGCCAATGGAAATTCCCCCTCCCACAACCACCATCATGAGATCATACTAAGCATATCTTCCATTATTGCCATTGGTGCAGCTTCTTTTATCCTACTTGGTGTAGTAGCTGTCACTATCCTCAATATCCGAGCAAGGTCCTCACAGTCACGGTCTGCTGCTCTTGTATTATCTGTCCGGGAGGACTTTAGCTGCTCTCCAAAAACTAATTCGGACTACGGAAAGCTCGTCATGTTTTCTGGAGATGCAGAGTTTGTAGTTGGCGCCCAAGCATTGCTGAACAAGGACTGCGAACTTGGTCGAGGTGGATTTGGGGTAGTTTACAAAACAGTGCTTCGAGATGGGTATTTAGTTGCAATCAAGAAGTTAACTGTCACAAGCTTGATCAAGTCACGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGACAGATCAGGCATCACAATCTTGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTCCTGATTTATGAATATGTCCCCAATGGAAGTTTGTATAAGCATTTACACGACAGAACTGGCGACAACTACTGTTTGTCTTGGCGGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGATTGGCTTATTTGCACCACAATAATATCATTCATTACAACTTGAAGTCAACCAATGTTTTGATAGATAGTTCTGGGAAACCAAAAGTAGGGGACTATGGGTTGGCAATGTTATTGCCAATGTTGGACCGTTGCATCTTAAGCAGTAAAATCCAAAGCGCTTTAGGATACATGGCTCCTGAGTTTGCCTGCAAGACAGTGACTATAACTGAAAAGTGTGATGTGTATGGTTTTGGCATCCTGGTTTTGGAAGTGGTGACGGGAAAAAGACCTGTCGAGTACATGGAAGATGATGTTATAGTTCTCTGTGATATGGTGAGGGTAGCTCTGGATGAAGGGACAGTGGAACGATGTGTTGATGAGAGGCTCCAATTGAACTTCCGCGTTGAAGAAGCTATTCCGGTAATGAAACTGGGTTTGATATGTGCATCTCAAGTACCATCGAACAGACCAGACATGAATGAGGTTGTCAATATATTAGAGTTGATCCAATCTCCCTCTGAAGTTGATGAGGAGTTGGAATGA 2937 42.8 MLFKLFLILVLAAAGVSAVDTAFNDDVLGLIVFKAGLQDPMGKLVTWNEDDETPCNWFGVKCNPKTNRVSELVLDGFSLSGHIGRGLLRLQFLQILSLANNNFTGTINSALSHLGNLQVIDLSDNSLSGPIPEQLFLQCGSIRVLSFARNNLIGNIPQSLTSCFSLELLNFSSNHLSGTLPSGLWYLRELQSLDLSDNLLEGQIPTGIQNLYDLRFVSLHKNRLSGKLPEDIGGCLLLKSLDFSENILSGGLPESMQMLSSCTYLNLRGNFLTGEVPRWIGELKNLDTLDLSANNFSGQLPSSIGNLQFLKKFNVSTNYLTRNLPESMENCNNLLSIDASHNRLTGNLPIWIFKAAMPSVPFSSYRLEENLSSPASFQGLQVLDLSSNIFSGHIPSNVGELGNLQLLNISRNHLVGSIPRSIGELKSAYALDFSDNQLSGSIPAEIGGAISLKELRLEKNFLTGEIPVKIGKCPLLTSLQWTSHNLPVEFQIRTNVCKILSHNNLTGSIPAAVANLSNLVDVDLSFNKLSGSLPKELTNLSHLLSFNISHNHLEGELPVGGFFNAISPLSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDANGNSPSHNHHHEIILSISSIIAIGAASFILLGVVAVTILNIRARSSQSRSAALVLSVREDFSCSPKTNSDYGKLVMFSGDAEFVVGAQALLNKDCELGRGGFGVVYKTVLRDGYLVAIKKLTVTSLIKSREDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEYVPNGSLYKHLHDRTGDNYCLSWRQRFKIVLGMAKGLAYLHHNNIIHYNLKSTNVLIDSSGKPKVGDYGLAMLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRVALDEGTVERCVDERLQLNFRVEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSPSEVDEELE* 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28544297 28547348 + CsaV3_3G033030.1 Csa03g02997 523902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02997 978 SMART LRR_sd22_2 187 213 - -
Csa03g02997 978 SMART LRR_sd22_2 283 309 - -
Csa03g02997 978 SMART LRR_sd22_2 516 542 - -
Csa03g02997 978 Gene3D Ribonuclease Inhibitor 182 278 IPR032675 -
Csa03g02997 978 Gene3D Ribonuclease Inhibitor 24 181 IPR032675 -
Csa03g02997 978 CDD STKc_IRAK 700 967 - -
Csa03g02997 978 SMART LRR_typ_2 187 210 IPR003591 -
Csa03g02997 978 SMART LRR_typ_2 90 113 IPR003591 -
Csa03g02997 978 SMART LRR_typ_2 211 235 IPR003591 -
Csa03g02997 978 SMART LRR_typ_2 401 425 IPR003591 -
Csa03g02997 978 SMART LRR_typ_2 114 138 IPR003591 -
Csa03g02997 978 SMART LRR_typ_2 283 307 IPR003591 -
Csa03g02997 978 SMART LRR_typ_2 516 539 IPR003591 -
Csa03g02997 978 SMART LRR_typ_2 540 564 IPR003591 -
Csa03g02997 978 Gene3D Ribonuclease Inhibitor 362 589 IPR032675 -
Csa03g02997 978 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 969 - -
Csa03g02997 978 Pfam Leucine Rich Repeat 403 425 IPR001611 GO:0005515
Csa03g02997 978 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Csa03g02997 978 SUPERFAMILY Protein kinase-like (PK-like) 697 971 IPR011009 -
Csa03g02997 978 Gene3D Phosphorylase Kinase; domain 1 679 770 - -
Csa03g02997 978 Pfam Protein tyrosine and serine/threonine kinase 696 963 IPR001245 GO:0004672|GO:0006468
Csa03g02997 978 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524
Csa03g02997 978 Gene3D Ribonuclease Inhibitor 279 359 IPR032675 -
Csa03g02997 978 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 3 969 - -
Csa03g02997 978 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Csa03g02997 978 SUPERFAMILY L domain-like 375 579 - -
Csa03g02997 978 SUPERFAMILY L domain-like 41 350 - -
Csa03g02997 978 ProSiteProfiles Protein kinase domain profile. 694 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02997 978 Gene3D Transferase(Phosphotransferase) domain 1 771 977 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02997 Csa-Chr3:28544297 Csa05g00901 Csa-Chr5:6985023 0 dispersed
Csa03g02997 Csa-Chr3:28544297 Csa06g00234 Csa-Chr6:1602954 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78027 PF07714 PK_Tyr_Ser-Thr 1.40E-41 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02997 - - csv:101222148 1827.76