Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03011 | ATGAGTTGTAACGAGAAGAATAGAGGGGTAAATGATAGGGAAACCGAACACCCAGTTTTGACCAAGCCACATCAGAAACCAGTCATCCAGAATGGATCCATAACGGCCCAACACTTGACCATCGATAATAATCTTCTTGTTGACCCCAAATTGCTATTTATTGGATCCAAGATTGGCGAGGGCGCTCACGGAAAAGTTTATGAAGGCAGGTACCGGAATGAAATTGTCGCCATTAAAGTTCTCCATCGAGGGAGTACTCCAGAAGAAAGAGCAGCACTTGAAAGTCGTTTTGCCCGTGAAGTAAATATGATGTCCCGAGTAAAACATGAAAATCTTGTCAAGTTTATTGGAGCTTGTAAAGAACCTCTAATGGTGATAGTTACAGAGCTATTACCAGGGATGTCACTCAGGAAGTATCTGATGAATAATCGTAAACAACAGCTGGACCCTCGGATGGCCATTAACTTTGCTTTGGATGTTGCTCGTGCTATGGATTGTCTACATGCAAATGGGATTATACATAGAGATCTGAAACCTGATAATTTGTTGCTTACTGCAAATCAAAGGTCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCAGAAACAGGGACTTACCGCTGGATGGCTCCTGAGTTGTATAGCACTGTTACATTGCGCCAGGGAGAGAAAAAGCATTACAACAACAAAGTTGACGTATACAGCTTTGGAATTGTCTTATGGGAGCTGTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATCTGCAAGCTGCGTATGCGGCTGCTTTCAAGCAAGAGAGACCCAGTATTCCAGGCGACATATCTCCCGAGCTGGCATTTATAGTACAGTCGTGTTGGGTTGAAGATCCTAACATGAGGCCCAGCTTCAGCCAGATCATCCGCATGCTTAATGCTTATCTATTTACACTCCCACCTCCTTCACAATCTTCACCATCGTCACCAAAATCTGACACAACAGAGACAGCAACAACTAGCAATAGTGCCATTACCGAGTTCTCTTCTCGTGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTGTTTGCTGCTAAGAGAGCTAAGAACTCGCAATAA | 1122 | 43.94 | MSCNEKNRGVNDRETEHPVLTKPHQKPVIQNGSITAQHLTIDNNLLVDPKLLFIGSKIGEGAHGKVYEGRYRNEIVAIKVLHRGSTPEERAALESRFAREVNMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLMNNRKQQLDPRMAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDISPELAFIVQSCWVEDPNMRPSFSQIIRMLNAYLFTLPPPSQSSPSSPKSDTTETATTSNSAITEFSSRARGKFGFLRQLFAAKRAKNSQ* | 374 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 28595217 | 28599207 | - | CsaV3_3G033170.1 | Csa03g03011 | 523916 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03011 | 373 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 25 | 352 | - | - | |
Csa03g03011 | 373 | MobiDBLite | consensus disorder prediction | 322 | 347 | - | - | |
Csa03g03011 | 373 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE | 25 | 352 | - | - | |
Csa03g03011 | 373 | Gene3D | Transferase(Phosphotransferase) domain 1 | 135 | 352 | - | - | |
Csa03g03011 | 373 | ProSitePatterns | Protein kinases ATP-binding region signature. | 58 | 79 | IPR017441 | GO:0005524 | |
Csa03g03011 | 373 | SMART | serkin_6 | 52 | 317 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g03011 | 373 | Gene3D | Phosphorylase Kinase; domain 1 | 40 | 131 | - | - | |
Csa03g03011 | 373 | SUPERFAMILY | Protein kinase-like (PK-like) | 51 | 347 | IPR011009 | - | |
Csa03g03011 | 373 | Pfam | Protein tyrosine and serine/threonine kinase | 54 | 313 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03011 | 373 | CDD | STKc_MAP3K-like | 58 | 313 | - | - | |
Csa03g03011 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 128 | 141 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03011 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 166 | 184 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03011 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 240 | 262 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03011 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 284 | 306 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03011 | 373 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 172 | 184 | IPR008271 | GO:0004672|GO:0006468 | |
Csa03g03011 | 373 | ProSiteProfiles | Protein kinase domain profile. | 52 | 317 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02826 | Csa-Chr1:24845691 | Csa03g03011 | Csa-Chr3:28595217 | 4.84E-06 | dispersed | |
Csa03g03011 | Csa-Chr3:28595217 | Csa03g03981 | Csa-Chr3:34800785 | 1.37E-124 | dispersed | |
Csa03g03011 | Csa-Chr3:28595217 | Csa05g01889 | Csa-Chr5:22098286 | 9.34E-149 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78029 | PF07714 | PK_Tyr_Ser-Thr | 7.70E-62 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03011 | - | - | csv:101223101 | 728.013 |