Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03011 ATGAGTTGTAACGAGAAGAATAGAGGGGTAAATGATAGGGAAACCGAACACCCAGTTTTGACCAAGCCACATCAGAAACCAGTCATCCAGAATGGATCCATAACGGCCCAACACTTGACCATCGATAATAATCTTCTTGTTGACCCCAAATTGCTATTTATTGGATCCAAGATTGGCGAGGGCGCTCACGGAAAAGTTTATGAAGGCAGGTACCGGAATGAAATTGTCGCCATTAAAGTTCTCCATCGAGGGAGTACTCCAGAAGAAAGAGCAGCACTTGAAAGTCGTTTTGCCCGTGAAGTAAATATGATGTCCCGAGTAAAACATGAAAATCTTGTCAAGTTTATTGGAGCTTGTAAAGAACCTCTAATGGTGATAGTTACAGAGCTATTACCAGGGATGTCACTCAGGAAGTATCTGATGAATAATCGTAAACAACAGCTGGACCCTCGGATGGCCATTAACTTTGCTTTGGATGTTGCTCGTGCTATGGATTGTCTACATGCAAATGGGATTATACATAGAGATCTGAAACCTGATAATTTGTTGCTTACTGCAAATCAAAGGTCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCAGAAACAGGGACTTACCGCTGGATGGCTCCTGAGTTGTATAGCACTGTTACATTGCGCCAGGGAGAGAAAAAGCATTACAACAACAAAGTTGACGTATACAGCTTTGGAATTGTCTTATGGGAGCTGTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATCTGCAAGCTGCGTATGCGGCTGCTTTCAAGCAAGAGAGACCCAGTATTCCAGGCGACATATCTCCCGAGCTGGCATTTATAGTACAGTCGTGTTGGGTTGAAGATCCTAACATGAGGCCCAGCTTCAGCCAGATCATCCGCATGCTTAATGCTTATCTATTTACACTCCCACCTCCTTCACAATCTTCACCATCGTCACCAAAATCTGACACAACAGAGACAGCAACAACTAGCAATAGTGCCATTACCGAGTTCTCTTCTCGTGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTGTTTGCTGCTAAGAGAGCTAAGAACTCGCAATAA 1122 43.94 MSCNEKNRGVNDRETEHPVLTKPHQKPVIQNGSITAQHLTIDNNLLVDPKLLFIGSKIGEGAHGKVYEGRYRNEIVAIKVLHRGSTPEERAALESRFAREVNMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLMNNRKQQLDPRMAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDISPELAFIVQSCWVEDPNMRPSFSQIIRMLNAYLFTLPPPSQSSPSSPKSDTTETATTSNSAITEFSSRARGKFGFLRQLFAAKRAKNSQ* 374
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 28595217 28599207 - CsaV3_3G033170.1 Csa03g03011 523916
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03011 373 PANTHER SERINE-THREONINE PROTEIN KINASE 25 352 - -
Csa03g03011 373 MobiDBLite consensus disorder prediction 322 347 - -
Csa03g03011 373 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 25 352 - -
Csa03g03011 373 Gene3D Transferase(Phosphotransferase) domain 1 135 352 - -
Csa03g03011 373 ProSitePatterns Protein kinases ATP-binding region signature. 58 79 IPR017441 GO:0005524
Csa03g03011 373 SMART serkin_6 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03011 373 Gene3D Phosphorylase Kinase; domain 1 40 131 - -
Csa03g03011 373 SUPERFAMILY Protein kinase-like (PK-like) 51 347 IPR011009 -
Csa03g03011 373 Pfam Protein tyrosine and serine/threonine kinase 54 313 IPR001245 GO:0004672|GO:0006468
Csa03g03011 373 CDD STKc_MAP3K-like 58 313 - -
Csa03g03011 373 PRINTS Tyrosine kinase catalytic domain signature 128 141 IPR001245 GO:0004672|GO:0006468
Csa03g03011 373 PRINTS Tyrosine kinase catalytic domain signature 166 184 IPR001245 GO:0004672|GO:0006468
Csa03g03011 373 PRINTS Tyrosine kinase catalytic domain signature 240 262 IPR001245 GO:0004672|GO:0006468
Csa03g03011 373 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672|GO:0006468
Csa03g03011 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Csa03g03011 373 ProSiteProfiles Protein kinase domain profile. 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02826 Csa-Chr1:24845691 Csa03g03011 Csa-Chr3:28595217 4.84E-06 dispersed
Csa03g03011 Csa-Chr3:28595217 Csa03g03981 Csa-Chr3:34800785 1.37E-124 dispersed
Csa03g03011 Csa-Chr3:28595217 Csa05g01889 Csa-Chr5:22098286 9.34E-149 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78029 PF07714 PK_Tyr_Ser-Thr 7.70E-62 CL0016 Csa PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03011 - - csv:101223101 728.013