Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03028 ATGAGTAACATAAACCAAACAATAAATACACTCGCTGGGGGATCTTCTGACAACAGAACCAATAATTTCGCCATGGAAGTTCCTAAATTCAAGTCTTTTCAACCTCCTCCATTCCCCATGTCTCCTTCTTCTTACCTTTCCTCTTTCTCTTCTGGTTTAAGCCCCACTGAGATTCTAAATTCCCCTCTTCTCTTCTCCTTTGGTGTTTTTCCATCTCCTACTACCGGTGCTTTAAACTTGAGAAATGATTATGAGGAGGTTGACCAACAAGAAATGAAGGGAGATGTTAAAAATTACTCTGTTTCTGCGTATAACCCACAAACAGGATCCTCTGTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACTTGACTCTACTGAATCCAAGCGGTTTGTCGTGTGATGAAAGTGGAGCTAAATCAGAATTTGTTAACACAGAAATGGCGGCAGCTGAATCAAAGCAAAATTCTCAGCTAGCAATTTACAACAGAGAACAACAAAAATCAGAGAACGATGGATATAATTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGCTATTACAAGTGCACGTTTCCAAGTTGCCCAACAAAGAAAAAAGTAGAAAGATCATTAGATGGGCAAATTACTGAGATTGTTTATAAGGGAACCCATAATCACGCCAAGCCTCAGCCGACAAGACGCTCCAGTAACTCCGGCGTTTACGATCCATCAGCGGCGGAAACCGGGGTGTTGCAGGAGGATTGTTCGGTGTCGGTGGGGGAGGAGGAATTCGAACCCAATTCGCCGTTTAGCAACTCGATTGAGGACAATGAAAACGAACCGGAAGCTAAGAGATGGAAAGGAGAAAATGAGAATGAGGGATATTGTGGGGGAGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTTGTTCAAACAACAAGTGAAATTGACATACTGCCTGATGGTTACAGATGGAGGAAATACGGACAAAAAGTCGTCAAAGGAAATCCAAATCCCAGGAGCTACTACAAATGCACATCTTTAGGTTGCCCGGTGAGGAAACACATCGAGAGAGCGGCCAACGACATGAGGGCTGTGATCACTACCTACGAAGGCAAACACAACCATGAAGTTCCAGCAGCACGTGGCAGCGGTGGCGGTGGCTACAACACCATCAACAGACCTATACCAACCAACATTCCAATGGCATTGAGGCCATTATCCAGTGTCACCAGCCATTCTTTCCCAGCAAATTTTCCAGCTGCATTCCGGCCAGGAAATTTAGGCATGTCAGAAACAGGAACACAAGCATCATCGTTCCCATTTCAAACATCACATGGAGTGCTTCCAAGTTTCCAAGTTTCGGGATTTGGATCAGCAGCCAAGGAAGAAGTAAGAGACGACACATACTTCATCAACTCATTTCTATCATAG 1431 43.82 MSNINQTINTLAGGSSDNRTNNFAMEVPKFKSFQPPPFPMSPSSYLSSFSSGLSPTEILNSPLLFSFGVFPSPTTGALNLRNDYEEVDQQEMKGDVKNYSVSAYNPQTGSSVSSYFQSSSSNLTLLNPSGLSCDESGAKSEFVNTEMAAAESKQNSQLAIYNREQQKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGTHNHAKPQPTRRSSNSGVYDPSAAETGVLQEDCSVSVGEEEFEPNSPFSNSIEDNENEPEAKRWKGENENEGYCGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGSGGGGYNTINRPIPTNIPMALRPLSSVTSHSFPANFPAAFRPGNLGMSETGTQASSFPFQTSHGVLPSFQVSGFGSAAKEEVRDDTYFINSFLS* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28698684 28702697 - CsaV3_3G033350.1 Csa03g03028 523933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03028 476 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g03028 476 MobiDBLite consensus disorder prediction 1 20 - -
Csa03g03028 476 MobiDBLite consensus disorder prediction 255 299 - -
Csa03g03028 476 SMART WRKY_cls 169 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g03028 476 SMART WRKY_cls 318 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g03028 476 MobiDBLite consensus disorder prediction 219 243 - -
Csa03g03028 476 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 444 IPR044810 GO:0003700
Csa03g03028 476 Pfam WRKY DNA -binding domain 170 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g03028 476 Pfam WRKY DNA -binding domain 320 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g03028 476 SUPERFAMILY WRKY DNA-binding domain 310 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g03028 476 ProSiteProfiles WRKY domain profile. 164 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g03028 476 MobiDBLite consensus disorder prediction 276 290 - -
Csa03g03028 476 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 19 444 - -
Csa03g03028 476 Gene3D WRKY domain 305 371 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g03028 476 MobiDBLite consensus disorder prediction 228 242 - -
Csa03g03028 476 Gene3D WRKY domain 154 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g03028 476 SUPERFAMILY WRKY DNA-binding domain 165 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00472 Csa-Chr1:2993098 Csa03g03028 Csa-Chr3:28698684 1.43E-116 dispersed
Csa03g00441 Csa-Chr3:3723776 Csa03g03028 Csa-Chr3:28698684 2.62E-77 dispersed
Csa03g03028 Csa-Chr3:28698684 Csa06g01599 Csa-Chr6:13759828 2.95E-81 dispersed
Csa03g03028 Csa-Chr3:28698684 Csa05g03014 Csa-Chr5:30396040 6.74E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31309 PF03106 WRKY 9.60E-25 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03028 K13424 - csv:101205651 863.988