Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03036 ATGGGAAAGGGTCACTACCCTCTGAGTGAATTTCAGGTATACCCATTTCAGTTCATGCAGATTCTTCCATCAAAAACTGCTGCTTGGTGCTCTAAATCACCAAATAACAACAGGAAACTCAAGAACCAACAATGGAGAAGCTGTTCTTCGTACCTCATTGCTCTGGCTTTTGCTCTTCTTTTGGCTTGTTCCTTTCGGCCAGTCACTGGCCAGATGTGGGATGGAGTGTCTGTTACTCAAGGCGACTTTCAAGCTCTTCAAGCTATAAAACATGAACTCGTTGATCTAAAAGGAGTTTTGCGTAGTTGGAATGGAAGTAATGGAGCTTGTTCCGGGCAGTGGGTAGGAATCAAGTGCGTGAAAGGGCAGGTTATTGCTATACAGCTTCCATGGAAGGCCCTTGCCGGCAGGATTTCTGATAGGATTGGGCAGCTCCGGGAACTTCGGAAGCTTAGCCTCCATGACAATGTGATCTCTGGCGTGATCCCTCGGTCCATCGGGTTCCTTCCAAATCTCAGAGGAATTTATCTTTTCAACAACAGATTATCAGGTTCTATTCCTCCTACTATTGGTCATCTTCCCCTACTTCAAACTCTTGATTTGAGCAACAATTTGCTCACTGGAGAAATTCCTTTCGGTATAGCAAATTCTACCAAATTGATTAGAGTTAATCTGAGTTACAATTCATTGTCGGGATCTATCCCAACAAGTTTCACGCAGTCGTTTTCTCTTATAATTCTCGCCCTTCAGCACAATAATATTTCTGGGACTGTCCCAGATTCTTGGGGAAGTCTTGGAAACAAAACTTGCCCACTTGGGGTTTTGACACTTGATCATAATGCTATATCTGGAGCAATTCCAGCTTCTTTAACTAAATTGGAATGGCTTCAAGAGATTTCCATCAGTGAGAACAAGATCTCTGGAGCTATACCAGGTGAAATAGGCAGGCTGAAGAGACTTCGTCTTTTGGATTTGTCGAATAACGCCATTAACGGCAGCTTCCCTTCAAGTTTCTCCAATCTCTCCTCTCTTCAGTTATTGAAGGTTGAAAATAATCGTCTTGAAAGCCAGATTCCAGAAGATATTGATAGATTGCACAATCTCTCGGTGGTCAAGCTTGGGAAGAATCGTTTTAGTGGTGAGATTCCTGCAAGTTTTGGGAACATTTCTGCTATTAGCCAACTTGATTTCTCAGAAAATAACTTCACTGGACAGATTCCAACATCATTGACCCGGTTGTTGAATCTAACCTCTTTCAATGTCTCTTACAACAATCTCTCTGGCCCTGTCCCAGTTCTCCTATCAAATAAGTTCAATGCGAGCTCTTTTGTAGGGAACCTTCAACTGTGTGGTTTTAGTACTTCAACTCCATGCCTACCTGCATCCTCCCCACAGAATATTACTACTCCATCAACTGAGGTCCTGAAACCGCGTCACCACCGCAGACTTAGTGTAAAGGACATAATCCTGATAGCGGCAGGAGCTCTGTTGGTGCTTCTTCTTCTTCTCTGCTCAATTTTGCTCTGTTGTTTATTATCAAAAAGAGCAGCTGCCAGGAAGACTGACAAAACAACTGCCAAGCAAGCTGCTGCCAGAAGCATCGAAAAGGCAGCACCCGGGAGCACAGAAGTTGGAGCAGGTGAAGCTGGTGGAAAACTAGTTCATTTTGATGGGCCATTCGTTTTCACTGCTGATGATCTTCTGTGTGCGACTGCTGAGATCATGGGCAAGAGCACATATGGAACAGCATATAAAGCAACATTGGAAGATGGAAATGAAGTTGCAGTGAAAAGATTGAGAGAGAAAACAACAAAAGGGCACAAGGAATTTGAAACCGAAGTTGCAGGCCTCGGAAAAATTCGACATCCAAATCTACTTGCTCTTAGAGCTTACTACTTAGGCCCCAAAGGAGAGAAGCTCCTGGTCTTTGATTACATGCCTAGAGGAAGCCTCTCTTCCTTCCTTCATGCTCGTGGACCAGAAACCACAGTCGATTGGCCAACAAGGATGAAAATAGCGATTGGAATCACGCAAGGCTTGAACTACCTCCACACAGAGGAGAATCTTATTCATGGAAACCTCACGTCCAGCAACATTCTGCTGGATGATCAGAGTAATGCTCGTATTGCAGATTTTGGGCTTCCCAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGATCACAGGGCTACAATGCACCAGAGCTAACAAAAACCAAAAAGACCACAACAAAGACAGATGTCTACAGCCTTGGAGTCATAATATTGGAACTCTTGACAGGAAAATCTCCTGGAGAAGCCATGGATGGAATGGACTTACCACAGTGGGTGGCCTCAATAGTAAAGGAAGAGTGGACAAATGAAGTGTTTGATTTGGAGCTTATGAAAGATACACAAAATATTGGCGATGAACTGCTGAACACTTTAAAACTAGCCCTGCATTGTGTTGATCCGTCACCAACTGCTCGGCCAGATGTTCAGCAGATTCTCCAGCAACTGGAGGAAATCAATGCTTCTACTTCTGGTGACGACGGTGCCAAAAATCAACCAGAAAATGAATAG 2574 44.06 MGKGHYPLSEFQVYPFQFMQILPSKTAAWCSKSPNNNRKLKNQQWRSCSSYLIALAFALLLACSFRPVTGQMWDGVSVTQGDFQALQAIKHELVDLKGVLRSWNGSNGACSGQWVGIKCVKGQVIAIQLPWKALAGRISDRIGQLRELRKLSLHDNVISGVIPRSIGFLPNLRGIYLFNNRLSGSIPPTIGHLPLLQTLDLSNNLLTGEIPFGIANSTKLIRVNLSYNSLSGSIPTSFTQSFSLIILALQHNNISGTVPDSWGSLGNKTCPLGVLTLDHNAISGAIPASLTKLEWLQEISISENKISGAIPGEIGRLKRLRLLDLSNNAINGSFPSSFSNLSSLQLLKVENNRLESQIPEDIDRLHNLSVVKLGKNRFSGEIPASFGNISAISQLDFSENNFTGQIPTSLTRLLNLTSFNVSYNNLSGPVPVLLSNKFNASSFVGNLQLCGFSTSTPCLPASSPQNITTPSTEVLKPRHHRRLSVKDIILIAAGALLVLLLLLCSILLCCLLSKRAAARKTDKTTAKQAAARSIEKAAPGSTEVGAGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGHKEFETEVAGLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTVDWPTRMKIAIGITQGLNYLHTEENLIHGNLTSSNILLDDQSNARIADFGLPKLMTSAAATNVIATAGSQGYNAPELTKTKKTTTKTDVYSLGVIILELLTGKSPGEAMDGMDLPQWVASIVKEEWTNEVFDLELMKDTQNIGDELLNTLKLALHCVDPSPTARPDVQQILQQLEEINASTSGDDGAKNQPENE* 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28729553 28733677 + CsaV3_3G033420.1 Csa03g03036 523941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03036 857 Pfam Leucine rich repeat 274 330 IPR001611 GO:0005515
Csa03g03036 857 Pfam Leucine rich repeat 146 206 IPR001611 GO:0005515
Csa03g03036 857 CDD STKc_IRAK 575 840 - -
Csa03g03036 857 Gene3D Transferase(Phosphotransferase) domain 1 647 855 - -
Csa03g03036 857 Gene3D Ribonuclease Inhibitor 80 243 IPR032675 -
Csa03g03036 857 SMART LRR_typ_2 317 340 IPR003591 -
Csa03g03036 857 SMART LRR_typ_2 193 217 IPR003591 -
Csa03g03036 857 SMART LRR_typ_2 169 192 IPR003591 -
Csa03g03036 857 SMART LRR_typ_2 341 365 IPR003591 -
Csa03g03036 857 SMART LRR_typ_2 413 436 IPR003591 -
Csa03g03036 857 SMART LRR_typ_2 145 168 IPR003591 -
Csa03g03036 857 MobiDBLite consensus disorder prediction 838 857 - -
Csa03g03036 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 35 845 - -
Csa03g03036 857 SUPERFAMILY L domain-like 101 450 - -
Csa03g03036 857 PRINTS Leucine-rich repeat signature 196 209 - -
Csa03g03036 857 PRINTS Leucine-rich repeat signature 317 330 - -
Csa03g03036 857 ProSiteProfiles Protein kinase domain profile. 569 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03036 857 SUPERFAMILY Protein kinase-like (PK-like) 573 841 IPR011009 -
Csa03g03036 857 Gene3D Ribonuclease Inhibitor 244 465 IPR032675 -
Csa03g03036 857 Pfam Protein tyrosine and serine/threonine kinase 573 837 IPR001245 GO:0004672|GO:0006468
Csa03g03036 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 35 845 - -
Csa03g03036 857 Gene3D Phosphorylase Kinase; domain 1 575 646 - -
Csa03g03036 857 Pfam Leucine rich repeat N-terminal domain 81 119 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03036 Csa-Chr3:28729553 Csa05g00862 Csa-Chr5:6592954 0 dispersed
Csa03g03036 Csa-Chr3:28729553 Csa01g02093 Csa-Chr1:18117705 5.87E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78030 PF07714 PK_Tyr_Ser-Thr 4.00E-42 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03036 - - csv:101206358 1615.51