Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03041 ATGGCTATGGGATTTTCTTTACCTTGCCTTGTGATATTATTTTTCTATGTAGCTGTTCTTTGTGTTCAAGCTTCATTTGTCTGCCATGGATTCAATAATTCAAGTATGCTCCTTGATCAAGGAGCTTCTATAGAGCCTTCTGGCTTGTTAAGACTAACCGACAGCTCCCAGTACGTTATTGGCCGTGCCTTCTATCCTGAGACCCAGCTGATGTTTGATATAAAATCTGAACCAGTTTCAGATGTTTCTTCTTTCAGCACATCTTTTGTGTTTGCGATAGTTCCATCAAGCTCTGGTCCACCAGTTGGGTATGGCCTCGCCTTTGTTATGGCTCCATCAACCCAATTTCCAGATGCTGCAAGTGAACATTACTTGGGATTATTCAACCCCTCCAACAATGGTGACCCTTCGAATCATATTTTTGCAGTCGAATTTGATACTGTTAATGGCCACGATGACGAAACGAATTTTAAAGGCAACCATGTTGGAATCAACAAGAATGGTGTGCGATCAAGTGCGTCTGAATCGGCTGAGTATTCTGACTATGGCTCTGATGTGAAGACGGAGGTGTATTTGGATACTGGTGATCTAATCCAAGCTTGGATTGATTATGATGGCCGTAGTAAGGTAGTGAATGTCACAATAGCTCCAGCAAGTGTAATCAGACCAACTGAGCCATTGATTTCATATCCCATTAACTTGACTTCAGTTTTGAATGAGAGGATGTTTGTGGGATTCTCTGCATCAACTGGAAAAGAAACAAGCTTCCACTACATTTCAGGTTGGAGTTTTGCAATCAACGAATCAGCACCTCAGTTAGATGTTTCTCAACTTCCTCCACCACTGAAAGTGCAAAGTCCTCCGCCTTCATCGCCGTCAACATTCAATCCTCTAGTCACTGTTGTCGTTCCAATATTATCTGCCATGACACTCATGTTAATTTTGTTCTTAGCCTCCATTTTCAGAAGAAGATTGCGAGGTGAGAACCTTGAAGAATGGGAAAGAGATTGTCCTCACAGATTTAGTTACAGAGATCTTTACAAAGCAACAAAGGGATTTAAAGACTCCGAGCTCATCGGATCAGGAGGCTTTGGCTCAGTATACAGAGGTGTCTTACCTTCCACAGGATGTGAAATTGCTGTAAAGAAGATAACAAGAAATGCGAGTCAAGGAATGAGGGAATTCGCTGCAGAAATTGAAAGTTTGGGCCGACTAAGACACAAGAACTTGGTAAATCTCCAAGGATGGTGCAAGAAACAGAACGATCTTCTCTTGGTTTATGACTATGTTCCAAACGGAAGCTTGGATTCTCTCCTTTACCATCCAAAAGACAACTTGGTACTGAATTGGGAACAAAGAATCAACATCCTCAAAGGAGTTGCTGGTGGATTGTTATACTTACACGAAGAATGGGAACAAGTCGTGATCCATCGAGATGTTAAGCCAAGTAATATATTGATAGATATTAGCATGAATGCTCGACTAAGCGACTTCGGCCTTGCAAGGTTATACGACCATGACCAAATATCACATACAACCAGCGTGGTTGGCACAATCGGGTACATCTCACCCGAGTTGGCTCGCACCGGAAAGGCATCGAAAACTACAGATGTCTTTGCCTATGGGGTACTAATTCTTGAAATGGCTTGTGGAAGAAGACCTCTAGAATCAGATATATTCATATTGGTAGATTGGGTAATGGAATGCTATGAAAAAGGTCGTGTTCTTGATGCAGCTGATCCAAAGTTGAATGGAATTTATGACATGGTTGAGATGGAAATGGTTTTGAAACTTGGACTTCTTTGTTCCCATTACAACCCTGAATCTAGGCCAAGCATGAGGCAAGTCACAAGGTTTCTTAATGGAGAAGACCAAATTCTTGCTTTTGATCCTTCACCTTATTCTCAAATCACATTTCAATCAAGCTCCGGATTCACTCAATTTATTCCACCTTCTTCCCGTACTTCAACCGCCAGCTTTCTCTCTTCAACTTCCATCGATGTAGGCAGGTAA 2013 41.83 MAMGFSLPCLVILFFYVAVLCVQASFVCHGFNNSSMLLDQGASIEPSGLLRLTDSSQYVIGRAFYPETQLMFDIKSEPVSDVSSFSTSFVFAIVPSSSGPPVGYGLAFVMAPSTQFPDAASEHYLGLFNPSNNGDPSNHIFAVEFDTVNGHDDETNFKGNHVGINKNGVRSSASESAEYSDYGSDVKTEVYLDTGDLIQAWIDYDGRSKVVNVTIAPASVIRPTEPLISYPINLTSVLNERMFVGFSASTGKETSFHYISGWSFAINESAPQLDVSQLPPPLKVQSPPPSSPSTFNPLVTVVVPILSAMTLMLILFLASIFRRRLRGENLEEWERDCPHRFSYRDLYKATKGFKDSELIGSGGFGSVYRGVLPSTGCEIAVKKITRNASQGMREFAAEIESLGRLRHKNLVNLQGWCKKQNDLLLVYDYVPNGSLDSLLYHPKDNLVLNWEQRINILKGVAGGLLYLHEEWEQVVIHRDVKPSNILIDISMNARLSDFGLARLYDHDQISHTTSVVGTIGYISPELARTGKASKTTDVFAYGVLILEMACGRRPLESDIFILVDWVMECYEKGRVLDAADPKLNGIYDMVEMEMVLKLGLLCSHYNPESRPSMRQVTRFLNGEDQILAFDPSPYSQITFQSSSGFTQFIPPSSRTSTASFLSSTSIDVGR* 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28751637 28754323 + CsaV3_3G033470.1 Csa03g03041 523946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03041 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Csa03g03041 670 Pfam Legume lectin domain 24 278 IPR001220 GO:0030246
Csa03g03041 670 CDD STKc_IRAK 359 622 - -
Csa03g03041 670 SMART serkin_6 353 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03041 670 Gene3D - 22 277 - -
Csa03g03041 670 PANTHER - 11 655 - -
Csa03g03041 670 CDD lectin_legume_LecRK_Arcelin_ConA 25 267 IPR001220 GO:0030246
Csa03g03041 670 Gene3D Phosphorylase Kinase; domain 1 338 429 - -
Csa03g03041 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 281 IPR013320 -
Csa03g03041 670 ProSitePatterns Protein kinases ATP-binding region signature. 359 383 IPR017441 GO:0005524
Csa03g03041 670 ProSiteProfiles Protein kinase domain profile. 353 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03041 670 Gene3D Transferase(Phosphotransferase) domain 1 430 628 - -
Csa03g03041 670 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 11 655 - -
Csa03g03041 670 SUPERFAMILY Protein kinase-like (PK-like) 337 657 IPR011009 -
Csa03g03041 670 Pfam Protein kinase domain 353 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00935 Csa-Chr2:8817850 Csa03g03041 Csa-Chr3:28751637 4.98E-65 dispersed
Csa03g03041 Csa-Chr3:28751637 Csa03g03164 Csa-Chr3:29333338 0 dispersed
Csa03g03041 Csa-Chr3:28751637 Csa03g03042 Csa-Chr3:28756256 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78031 PF00069 Pkinase 3.70E-51 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03041 - - csv:101216151 1293.87