Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03043 ATGGCCGCCGGATCCCCGTCATGGCTCAACACCGGCGACAATTCCTGGCAAATTACAGCCTCCACTCTCGTAGGACTTCAGAGCATGCCTGGACTTGTGATACTCTACGCCAGCATCGTCAAAAAGAAATGGGCTGTTAATTCAGCGTTTATGGCTCTTTACGCCTTCGCCGCCGTTCTAATTTGTTGGGTCGTCGTCGGTTACAGAATGGCCTTCGGCGACCAGTTGATTCCTTTGTGGGGCAAAGGAATTCCAGCTCTGTCCCAAAGTTATCTAATAGGGCAAGGCAATATCCCTGAGAGTGGCGTGAACGATGGAAGAGGAACACCCAGAATTCAACCCAATGTTCCCATGGCTTCACTTGTGTATTTTCAATTTACTTTTGCCGCGATTACTGTGATTTTACTTGGTGGGTCTGTTCTTGCAAGAATGAACATCAAAGCTTGGATGGCCTTTGTTCCTCTTTGGGTAATTTTCTCATACACCGTCGGCGCATACAGTGTTTGGGGCGGTGGGTTTCTGTTTCAGTGGGGAGTAATTGATTACTCCGGTGGGTATGTAATTCATCTTTCGTCTGGAATTGCTGGGTTAACAGCAGCTTATTGGGTTGGGCCGAGGATAAAAAGTGACAGAGAGAGGTTTCCGCCGAATAACGTGTTGCTTATGTTGGCCGGAGCAGGGCTGTTGTGGATGGGGTGGTCGGGTTTTAACGGGGGAGCACCGCACTCGGCGAACGTGGTGGCGTCGATAGCGGTGCTGAATACGAACGTGAGTGCCGCGACGAGCTTGTTGGTTTGGACCATTTTGGATGTGTTCTACTTTGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACACCTGGCGCTGGAGTCGTGCAGACGTGGGCGGCTATCATAATGGGAATCCTAGCAGGAAGCATTCCATGGCTATCCATGATGGTCCTTCATAAAAAATTGAGTTTCTTGCAAAAGGCTGATGACACGCTTGGCGTATTTCACACGCACGCAGTGGCAGGATTAATGGGCGGGCTTTTAACTGGGCTTTTAGCGGAGCCCACTCTTTGCGATCTCTACCTACCGATCATCGGCACGCGCGGCGCCTTTTACGGCGGAAGCGGCGGCGTTCAGTTCCTTAAACAACTGGCCGGATCCACCTTCATCATAGGCTGGAACATAGTCTCCACCACCGTAATACTCCTCTTTATTCGCCTCTTTATGCCCTTGAGAATGCCCGATGAGGAACTCATGATCGGCGACGACGCCGTCCACGGCGAGGAGGCTTATGCTCTTTGGGGCGACGGCGAGAAATTCGATCCAAGAAGGCACGGCAATGCGGCAGCCAATATGGAAGAAGGAGCCGGATCGCCTTATATAAATGGTGCTAGAGGAGTGATCATCGAATTGTAA 1431 51.15 MAAGSPSWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVVVGYRMAFGDQLIPLWGKGIPALSQSYLIGQGNIPESGVNDGRGTPRIQPNVPMASLVYFQFTFAAITVILLGGSVLARMNIKAWMAFVPLWVIFSYTVGAYSVWGGGFLFQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGILAGSIPWLSMMVLHKKLSFLQKADDTLGVFHTHAVAGLMGGLLTGLLAEPTLCDLYLPIIGTRGAFYGGSGGVQFLKQLAGSTFIIGWNIVSTTVILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAANMEEGAGSPYINGARGVIIEL* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28760862 28764522 + CsaV3_3G033490.1 Csa03g03043 523948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03043 476 PANTHER AMMONIUM TRANSPORTER MEP2 4 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Csa03g03043 476 TIGRFAM amt: ammonium transporter 13 436 IPR001905 GO:0008519|GO:0016020|GO:0072488
Csa03g03043 476 ProSitePatterns Ammonium transporters signature. 181 206 IPR018047 GO:0008519|GO:0016020|GO:0072488
Csa03g03043 476 PRINTS Rhesus blood group protein signature 125 141 IPR002229 GO:0005887
Csa03g03043 476 PRINTS Rhesus blood group protein signature 220 238 IPR002229 GO:0005887
Csa03g03043 476 PRINTS Rhesus blood group protein signature 251 273 IPR002229 GO:0005887
Csa03g03043 476 PRINTS Rhesus blood group protein signature 306 324 IPR002229 GO:0005887
Csa03g03043 476 PRINTS Rhesus blood group protein signature 344 360 IPR002229 GO:0005887
Csa03g03043 476 PANTHER AMMONIUM TRANSPORTER 2 4 473 - -
Csa03g03043 476 Pfam Ammonium Transporter Family 16 436 IPR024041 GO:0008519|GO:0016020|GO:0072488
Csa03g03043 476 Gene3D Ammonium transporter AmtB like domains 1 439 IPR029020 -
Csa03g03043 476 SUPERFAMILY Ammonium transporter 8 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01153 Csa-Chr3:9037503 Csa03g03043 Csa-Chr3:28760862 1.14E-17 dispersed
Csa03g02642 Csa-Chr3:24916558 Csa03g03043 Csa-Chr3:28760862 1.46E-17 dispersed
Csa03g03043 Csa-Chr3:28760862 Csa06g03370 Csa-Chr6:28054966 1.13E-178 dispersed
Csa03g03043 Csa-Chr3:28760862 Csa02g01000 Csa-Chr2:9652408 1.98E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03043 K03320 - csv:101207321 939.102