Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03048 ATGGACATGGATACAGACGAAAATTCGAATGCTAAAGGAAAGGAAGGGCAAGGAAAGCTCATAATGGTAATATTAGTGGGTGCACCTGGAAGTGGCAAGTCCACCTTTTGCGAACTTGTTATGGGTTCCTCTTCTCGCCCTTGGGTTCGAATCTGTCAGGATACCATTGGAAATGGCAAGTCTGGAACCAGAGCACAGTGCTTGAAGACTGCAACGAGTGCACTGAATGATGGAAAAAGTGTATTCGTGGACAGGTGCAATCTTGAAATAGAGCAGCGTGCAGATTTTGTGAAGCTCGGGGGCCCTCAAGTGGATGTACATGCTGTTGTATTAGATCTTCCTGCTCAGCTCTGTATCTCTCGTTCTGTTAAGCGGACTGGTCATGAAGGGAACTTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAAGAAAGAATTGCCCAAACTTAATGAAGGGTTCACTCGCATAACCTTTTGCCATAATGAGTCCGACGTTCTATCCGCTATAGATATGTACAAATCGCTTGATTTACATACTATGCTTCCACATGGATGTTTTGGACAGAAGAACCCAGACAAGAAAGTACAACTTGGCATAACGAAGTTCTTGAAGAAAGCAGAAAAACCTTCAAAAACGTGTTCTAGTGCCAATACCGACAAGAATTCTCCAACTCCTCAACCTACCCAGGAAAAGAGGGAGTCTTGTGGTAAAAAGGAAGAGTCTTCCTGCACAATGTCGAGAAATGTAGCTATGGAGTCAGAGAAAGGTGAAAGTCCAGGCATTAGATCCTTAAAAGACAAGATTTCTCAAAGTGATCCACCAACTCTTGCATTCCCATCTATTTCGACTTCAGATTTCAAGTTTAGCCATGAGAAGGCTGCTGAAATTATTGTTGAGAAGGTTGAAGAATTCATGGATAAGCTTGGAAATGCCAGACTTGTACTGGTAGACTTGAGTCATGGATCAAAGATATTGTCTATGGTTAAAGCTAAAGCAACCGAGAAAAATATTAGTTCCACCAAGTTTTTTACATTCGTAGGTGATATAACTAAACTCAATTCCGAAGGTGGATTGCGCTGCAATGTTATAGCCAATGCTGCAAACTGGCGACTGAAACCAGGAGGTGGTGGTGTGAATGCTGCAATTTTTAGTGCTGCAGGTTCCGGTCTGGAAGTGGCAACTAAACAACAAGCAAACTCCCTTCAACCTGGAAATGCCGTGGCTGTTCAATTGCCTTCAACTTCTCCTTTATTAAATAGGGAAGGAGTAACCCATGTCATACATGTTCTTGGGCCCAACATGAATCCACAAAGGCCAAATTATCTCAACAATGACTATGATGAAGGTTGCAAGCTTCTTGGCAATGCTTACTCTTCCCTATTTCAGGCCTTTATTTCAATCGTACAAGACAAATACAAGTCGGTTAAGGGAATTCATGAATGTCTCGGCTCAACACCTCCAGAACTACAAAAGCACTCTGAGGACGGTCATCACAAGTTTAAGAGAGAGAATTTGCAAAATCTTGAAAGAAGCAAAAAATGGAAAGGATCTCAGAACTCAACCGAAGGATTAAACCAAAACAACAATACTGTTCCCAAAAAGAGTAAGCACTGGGGTTCGTGGGCACAAGCACTTTATGACACTGCAATGCATCCCGAGCGACATACCAATTCTGTACTAGAGACATCAGATGATGTTGTAGTACTGTATGATATTTATCCGAAGGCACGCAAGCATCTTTTAGTAGTGGCTCGGCATGAAGGCCTCGATCAACTAGCCGACGTATGTACAGAACACCTTCCATTATTGAGGACAATGCACGCTATGGGTTTGAAGTGGATCAATAAGTTCTTTCGTGAAGATGGCCCATTGGTCTTTCGCCTCGGATACCACTCGGCTCCATCAATGAGGCAGCTGCACCTCCATGTTATAAGCCAGGATTTCGATTCCAGTCATCTGAAAAACAAGAAGCACTGGAATTCTTTCAACACCGATTTCTTCAGAGACTCAGTCATCGTTATAAACGAAGTCAGTAGCCATGGAAAGGCGAACATCATGGACGATGAGAGCTTGATGTCTATGGAGTTACGTTGCAACAGATGCAGAAGTGCTCATCCCAACTTACCCAAGTTGAAAGCGCATATTTCCAAATGCCAAGCGCCTTTCCCTTCCACACTGCTCGAGGGCGGTCGTTTAGTCGTTGAGCCAAGTAATGCTCCTCTCTCTTAG 2241 43.33 MDMDTDENSNAKGKEGQGKLIMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTRAQCLKTATSALNDGKSVFVDRCNLEIEQRADFVKLGGPQVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNESDVLSAIDMYKSLDLHTMLPHGCFGQKNPDKKVQLGITKFLKKAEKPSKTCSSANTDKNSPTPQPTQEKRESCGKKEESSCTMSRNVAMESEKGESPGIRSLKDKISQSDPPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMDKLGNARLVLVDLSHGSKILSMVKAKATEKNISSTKFFTFVGDITKLNSEGGLRCNVIANAANWRLKPGGGGVNAAIFSAAGSGLEVATKQQANSLQPGNAVAVQLPSTSPLLNREGVTHVIHVLGPNMNPQRPNYLNNDYDEGCKLLGNAYSSLFQAFISIVQDKYKSVKGIHECLGSTPPELQKHSEDGHHKFKRENLQNLERSKKWKGSQNSTEGLNQNNNTVPKKSKHWGSWAQALYDTAMHPERHTNSVLETSDDVVVLYDIYPKARKHLLVVARHEGLDQLADVCTEHLPLLRTMHAMGLKWINKFFREDGPLVFRLGYHSAPSMRQLHLHVISQDFDSSHLKNKKHWNSFNTDFFRDSVIVINEVSSHGKANIMDDESLMSMELRCNRCRSAHPNLPKLKAHISKCQAPFPSTLLEGGRLVVEPSNAPLS* 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28781132 28785115 + CsaV3_3G033540.1 Csa03g03048 523953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03048 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 165 IPR027417 -
Csa03g03048 746 SUPERFAMILY HIT-like 531 706 IPR036265 -
Csa03g03048 746 MobiDBLite consensus disorder prediction 515 539 - -
Csa03g03048 746 SMART YBR022w_8 345 519 IPR002589 -
Csa03g03048 746 ProSitePatterns HIT domain signature. 631 649 IPR019808 -
Csa03g03048 746 SUPERFAMILY Macro domain-like 327 467 IPR043472 -
Csa03g03048 746 Pfam AAA domain 22 144 - -
Csa03g03048 746 MobiDBLite consensus disorder prediction 513 539 - -
Csa03g03048 746 MobiDBLite consensus disorder prediction 214 279 - -
Csa03g03048 746 Pfam Macro domain 368 451 IPR002589 -
Csa03g03048 746 Gene3D - 544 725 IPR036265 -
Csa03g03048 746 Gene3D Leucine Aminopeptidase, subunit E, domain 1 325 480 IPR043472 -
Csa03g03048 746 Pfam Scavenger mRNA decapping enzyme C-term binding 555 662 - -
Csa03g03048 746 MobiDBLite consensus disorder prediction 214 234 - -
Csa03g03048 746 Gene3D - 3 177 IPR027417 -
Csa03g03048 746 Pfam C2HE / C2H2 / C2HC zinc-binding finger 667 721 IPR032566 -
Csa03g03048 746 PANTHER APRATAXIN-RELATED 20 742 - -
Csa03g03048 746 Gene3D Leucine Aminopeptidase, subunit E, domain 1 181 324 IPR043472 -
Csa03g03048 746 ProSiteProfiles HIT domain profile. 549 657 IPR011146 GO:0003824
Csa03g03048 746 PANTHER APRATAXIN 20 742 IPR026963 GO:0003677|GO:0006281|GO:0033699
Csa03g03048 746 ProSiteProfiles Macro domain profile. 333 585 IPR002589 -
Csa03g03048 746 SUPERFAMILY Macro domain-like 265 315 IPR043472 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03048 K10863 - csv:101216867 1510.74