Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03064 ATGGAAGGCCATCATCATCCTCATCCTCATCCCCATCCCCATCCCCATCCGCATCCCCTTCTTCATCTCCATCAACAGCAACAGATTCAACATCCGCCTCCTCCGCCACCGCATCTCCACCAGAGCCTCGCCGTCGATCAAGCTACCACCGCCACAGCCATCGCCGATAGATTTCCTCAATGGAGTATTCAAGAAACAAAGGAGTTTTTGATGATCAGAGCGGAGTTGGATCAAACCTTCATGGAAACAAAACGAAACAAACTCTTGTGGGAAATTACTGCCTCGAAAATGAAGGAAAAGGGTTTTAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTTACTCGTTACAAGGGTTGTGAAACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAATTACAAGCAATATTTGGAGCAAGAAGGGAAAGGTTATTATGGGCGGAGGCGGAGAGCGGCGGGAGCGGGTTAAAGAAGAAAATGATGGTATTATCGTCCGATGACGAGGATGAGAACGACGATAGCGATGGCGATGGAGGTGAGACAAAAGTTAGCGGTAGGAAGAGGAAAAAGGTTAAAGGAACGACGATGGGCGGGGCAGAGGGGAGCGGAAAGAGTAGTATGAATGAATTAAAAGAAATATTGGAAGATTTTATGAATCAACAAATGCAAATGGAAGTGCAGTGGAGAGAAGCATTTGAGGCAAGAGAAAAAGAGAGACAAATGAAAGAAATGGAATGGAGAAGAAATATGGAAGCTTTAGAACATGAAAGGATAATGTTGGAAAGAAGATGGAGAGAAAGAGAAGAACAAAGAAGAATGAGAGAAGAAGTTAGGGCTGAGAAAAGAGATGCCTTAATCACAGCTTTGTTAAACAAGCTTAGAAGAGATGATCATATTTAA 924 43.51 MEGHHHPHPHPHPHPHPHPLLHLHQQQQIQHPPPPPPHLHQSLAVDQATTATAIADRFPQWSIQETKEFLMIRAELDQTFMETKRNKLLWEITASKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFGARRERLLWAEAESGGSGLKKKMMVLSSDDEDENDDSDGDGGETKVSGRKRKKVKGTTMGGAEGSGKSSMNELKEILEDFMNQQMQMEVQWREAFEAREKERQMKEMEWRRNMEALEHERIMLERRWREREEQRRMREEVRAEKRDALITALLNKLRRDDHI* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28871011 28872557 - CsaV3_3G033700.1 Csa03g03064 523969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03064 307 Pfam Myb/SANT-like DNA-binding domain 60 144 IPR044822 -
Csa03g03064 307 ProSiteProfiles Myb-like domain profile. 61 117 IPR001005 -
Csa03g03064 307 MobiDBLite consensus disorder prediction 1 41 - -
Csa03g03064 307 Coils Coil 251 278 - -
Csa03g03064 307 MobiDBLite consensus disorder prediction 172 214 - -
Csa03g03064 307 PANTHER - 42 304 - -
Csa03g03064 307 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 42 304 - -
Csa03g03064 307 CDD GT1 59 124 - -
Csa03g03064 307 Gene3D - 61 122 - -
Csa03g03064 307 Coils Coil 215 235 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03064 Csa04g01622 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03064 Csa-Chr3:28871011 Csa05g00132 Csa-Chr5:686982 7.01E-06 dispersed
Csa02g01808 Csa-Chr2:17395198 Csa03g03064 Csa-Chr3:28871011 3.78E-11 transposed
Csa03g03386 Csa-Chr3:30539205 Csa03g03064 Csa-Chr3:28871011 1.18E-07 transposed
Csa04g00690 Csa-Chr4:4691367 Csa03g03064 Csa-Chr3:28871011 7.08E-40 transposed
Csa05g02745 Csa-Chr5:28184757 Csa03g03064 Csa-Chr3:28871011 8.84E-09 transposed
Csa03g03064 Csa-Chr3:28871011 Csa04g01622 Csa-Chr4:15600258 5.27E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31310 PF13837 Myb_DNA-bind_4 2.50E-18 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03064 - - csv:101211490 492.271