Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03069 ATGGAAATTCCTTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACACTGCTCGTCGTGCCGCTCTTGTTCGCGCCCTTGCTCACGATGTTGATGAATTCTACGGCCTTTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCTAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCCCTTGGAATTAACTTCGCTAGAGATGGCATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTACTTTGGAGCAAGGCTTAATCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTATTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGACAGTGGAAGTAGATCACAAGGAAGCTCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCAAAACTTGCCGAACAGAGTTGCGAGGAGGATGTCGATGAACACAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTCTGGATCGGCTGTGACATCTGCGAAAGGTGGTACCATGGAAAGTGCGTAAGGATAACTCCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAAGGCAGACAGTAG 723 44.95 MEIPSTTPKTVEEIFKDYTARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYFGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSSKRSNDGQVKSNPKLAEQSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ* 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28902930 28905701 - CsaV3_3G033750.1 Csa03g03069 523974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03069 240 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Csa03g03069 240 CDD PHD_AL_plant 186 236 IPR044104 -
Csa03g03069 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Csa03g03069 240 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Csa03g03069 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Csa03g03069 240 Pfam PHD-finger 187 235 IPR019787 -
Csa03g03069 240 MobiDBLite consensus disorder prediction 141 175 - -
Csa03g03069 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
Csa03g03069 240 PANTHER CPG BINDING PROTEIN 5 239 IPR045104 GO:0006355|GO:0042393
Csa03g03069 240 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 5 239 - -
Csa03g03069 240 MobiDBLite consensus disorder prediction 146 170 - -
Csa03g03069 240 SMART PHD_3 186 234 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03069 Csa-Chr3:28902930 Csa07g02370 Csa-Chr7:21860290 1.04E-96 dispersed
Csa02g01621 Csa-Chr2:15351291 Csa03g03069 Csa-Chr3:28902930 1.74E-24 transposed
Csa03g03069 Csa-Chr3:28902930 Csa05g00818 Csa-Chr5:5926088 3.00E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31311 PF12165 Alfin 2.40E-67 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03069 - - csv:101211970 466.848