Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03069 | ATGGAAATTCCTTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACACTGCTCGTCGTGCCGCTCTTGTTCGCGCCCTTGCTCACGATGTTGATGAATTCTACGGCCTTTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCTAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCCCTTGGAATTAACTTCGCTAGAGATGGCATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTACTTTGGAGCAAGGCTTAATCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTATTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGACAGTGGAAGTAGATCACAAGGAAGCTCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCAAAACTTGCCGAACAGAGTTGCGAGGAGGATGTCGATGAACACAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTCTGGATCGGCTGTGACATCTGCGAAAGGTGGTACCATGGAAAGTGCGTAAGGATAACTCCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAAGGCAGACAGTAG | 723 | 44.95 | MEIPSTTPKTVEEIFKDYTARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYFGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSSKRSNDGQVKSNPKLAEQSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ* | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 28902930 | 28905701 | - | CsaV3_3G033750.1 | Csa03g03069 | 523974 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03069 | 240 | SUPERFAMILY | FYVE/PHD zinc finger | 176 | 238 | IPR011011 | - | |
Csa03g03069 | 240 | CDD | PHD_AL_plant | 186 | 236 | IPR044104 | - | |
Csa03g03069 | 240 | ProSitePatterns | Zinc finger PHD-type signature. | 187 | 233 | IPR019786 | - | |
Csa03g03069 | 240 | Pfam | Alfin | 10 | 135 | IPR021998 | GO:0006355|GO:0042393 | |
Csa03g03069 | 240 | ProSiteProfiles | Zinc finger PHD-type profile. | 184 | 236 | IPR019787 | - | |
Csa03g03069 | 240 | Pfam | PHD-finger | 187 | 235 | IPR019787 | - | |
Csa03g03069 | 240 | MobiDBLite | consensus disorder prediction | 141 | 175 | - | - | |
Csa03g03069 | 240 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 234 | IPR013083 | - | |
Csa03g03069 | 240 | PANTHER | CPG BINDING PROTEIN | 5 | 239 | IPR045104 | GO:0006355|GO:0042393 | |
Csa03g03069 | 240 | PANTHER | ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED | 5 | 239 | - | - | |
Csa03g03069 | 240 | MobiDBLite | consensus disorder prediction | 146 | 170 | - | - | |
Csa03g03069 | 240 | SMART | PHD_3 | 186 | 234 | IPR001965 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03069 | Csa-Chr3:28902930 | Csa07g02370 | Csa-Chr7:21860290 | 1.04E-96 | dispersed | |
Csa02g01621 | Csa-Chr2:15351291 | Csa03g03069 | Csa-Chr3:28902930 | 1.74E-24 | transposed | |
Csa03g03069 | Csa-Chr3:28902930 | Csa05g00818 | Csa-Chr5:5926088 | 3.00E-141 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31311 | PF12165 | Alfin | 2.40E-67 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03069 | - | - | csv:101211970 | 466.848 |